Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s53.

Sample reads: 133,409. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 18741.72 140488.30
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4179.82 31332.01 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 1733.76 12996.30 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. mt-co2 ENSDARG00000063908 1320.39 9897.67 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
5. mt-nd2 ENSDARG00000063899 1284.52 9628.79 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
6. mt-atp6 ENSDARG00000063911 1082.96 8117.89 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
7. mt-nd4 ENSDARG00000063917 1014.64 7605.76 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
8. zgc:112425 zgc:112425 1006.09 7541.67
9. si:dkey-151g10.6 si:dkey-151g10.6 859.19 6440.51
10. ppiaa ENSDARG00000009212 850.65 6376.49 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
11. eef1a1l1 ENSDARG00000020850 734.50 5505.83 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
12. mt-co3 ENSDARG00000063912 696.92 5224.13 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
13. rpl10a ENSDARG00000042905, ENSDARG00000115649 676.42 5070.46 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
14. rpl23 ENSDARG00000053457 635.43 4763.20 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
15. actb2 ENSDARG00000037870 608.10 4558.33 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
16. actb1 ENSDARG00000037746, ENSDARG00000113649 570.52 4276.63 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
17. efemp2a ENSDARG00000094324 538.06 4033.31 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
18. hmga1a ENSDARG00000028335 509.03 3815.70 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
19. mt-nd1 ENSDARG00000063895 509.03 3815.70 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
20. rpl21 ENSDARG00000010516, ENSDARG00000110263 491.94 3687.59 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
21. tpma ENSDARG00000033683 483.40 3623.58 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
22. myl10 ENSDARG00000062592 481.70 3610.83 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
23. rps26l ENSDARG00000030408 452.66 3393.15 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
24. rpl18a ENSDARG00000025073 442.41 3316.31 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
25. acta1a ENSDARG00000036371 430.45 3226.66 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
26. si:dkeyp-86f7.3 si:dkeyp-86f7.3 423.62 3175.46
27. mt-cyb ENSDARG00000063924 418.49 3137.01 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
28. rps23 ENSDARG00000021838 415.08 3111.45 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
29. zgc:66286 zgc:66286 404.83 3034.61
30. rpl19 ENSDARG00000013307 386.04 2893.76 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
31. hspa8 ENSDARG00000068992, ENSDARG00000114726 384.33 2880.95 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
32. rpl8 ENSDARG00000014867 384.33 2880.95 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
33. rpl26 ENSDARG00000102317 377.50 2829.75 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
34. rps14 ENSDARG00000036629 358.71 2688.90 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
35. btf3 ENSDARG00000035400, ENSDARG00000116462 355.29 2663.26 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
36. rpl11 ENSDARG00000043509 350.17 2624.88 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
37. rpl36 ENSDARG00000100588 341.63 2560.87 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
38. rpl9 ENSDARG00000037350, ENSDARG00000112384 336.50 2522.41 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
39. rplp1 ENSDARG00000021864 322.84 2420.02 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
40. cyt1l ENSDARG00000036832 319.42 2394.38 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
41. eef2b ENSDARG00000100371, ENSDARG00000109247 317.71 2381.56 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
42. rpl36a ENSDARG00000058105, ENSDARG00000112656 317.71 2381.56 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
43. rpl27 ENSDARG00000015128 314.30 2356.00 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
44. id1 ENSDARG00000040764 312.59 2343.18 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
45. rps15 ENSDARG00000070849, ENSDARG00000110979 310.88 2330.36 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
46. rps27a ENSDARG00000032725, ENSDARG00000114059 304.05 2279.16 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
47. zgc:92533 zgc:92533 304.05 2279.16
48. hsp90ab1 ENSDARG00000029150 302.34 2266.35 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
49. pcna ENSDARG00000054155 295.51 2215.15 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
50. rps20 ENSDARG00000036044 290.38 2176.69 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
51. rps27.1 ENSDARG00000023298 288.68 2163.95 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
52. rpl6 ENSDARG00000058451 280.14 2099.93 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
53. krt8 ENSDARG00000058358, ENSDARG00000109279 278.43 2087.12 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
54. ptmab ENSDARG00000101766 276.72 2074.30 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
55. AL954137.2 ENSDARG00000114408 275.01 2061.48
56. eif5a ENSDARG00000017235 269.89 2023.10 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
57. hsp90aa1.1 ENSDARG00000010478 268.18 2010.28 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
58. rpl18 ENSDARG00000029533 268.18 2010.28 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
59. rps5 ENSDARG00000043453 268.18 2010.28 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
60. rps2 ENSDARG00000077291 266.47 1997.46 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
61. rps4x ENSDARG00000014690 263.05 1971.83 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
62. tpm3 ENSDARG00000005162 263.05 1971.83 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
63. cfl1l ENSDARG00000012972 257.93 1933.45 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
64. rpl7 ENSDARG00000007320 257.93 1933.45 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
65. rps15a ENSDARG00000010160 252.80 1894.99 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
66. rps10 ENSDARG00000034897 251.10 1882.25 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
67. rps6 ENSDARG00000019778 249.39 1869.43 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
68. cirbp cirbp 245.97 1843.80
69. rpl35 ENSDARG00000018334 245.97 1843.80 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
70. si:ch1073-429i10.3 244.26 1830.98 si:ch1073-429i10.3, transcript variant X2
71. rpl15 ENSDARG00000009285 242.56 1818.23 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
72. fabp3 ENSDARG00000023290 240.85 1805.42 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
73. rps19 ENSDARG00000030602 239.14 1792.60 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
74. zgc:123194 zgc:123194 239.14 1792.60
75. smyhc1 ENSDARG00000099959, ENSDARG00000115916 235.72 1766.96 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
76. rpl5b ENSDARG00000015862, ENSDARG00000109661 232.31 1741.40 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
77. rplp0 ENSDARG00000051783 227.18 1702.95 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
78. RPL29 ENSDARG00000077717 225.47 1690.13 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
79. rplp2l ENSDARG00000011201 220.35 1651.75 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
80. rpl24 ENSDARG00000099104 218.64 1638.93 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
81. rpsa ENSDARG00000019181 218.64 1638.93 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
82. fkbp1aa ENSDARG00000022684 216.93 1626.11 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
83. rps12 ENSDARG00000036875, ENSDARG00000115157 213.52 1600.55 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
84. npm1a ENSDARG00000014329, ENSDARG00000113199 211.81 1587.73 nucleophosmin 1a [Source:ZFIN;Acc:ZDB-GENE-021028-1]
85. rpl31 ENSDARG00000053365 208.39 1562.10 ribosomal protein L31 [Source:ZFIN;Acc:ZDB-GENE-060331-121]
86. cfl1 ENSDARG00000021124 206.69 1549.35 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
87. rps9 ENSDARG00000011405, ENSDARG00000113248 206.69 1549.35 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
88. apoc1l apoc1l 201.56 1510.90
89. faua ENSDARG00000099022 199.85 1498.08 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
90. rpl39 ENSDARG00000036316, ENSDARG00000117167 199.85 1498.08 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
91. rps3 ENSDARG00000103007 198.14 1485.26 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
92. cd81 cd81 193.02 1446.88
93. rpl17 ENSDARG00000057556 193.02 1446.88 ribosomal protein L17 [Source:ZFIN;Acc:ZDB-GENE-030131-8585]
94. atp5g3b 191.31 1434.06 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
95. h3f3a 191.31 1434.06 H3 histone, family 3A, transcript variant X1
96. rps24 ENSDARG00000039347 191.31 1434.06 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
97. COX5B_1 ENSDARG00000015978 189.60 1421.25 cytochrome c oxidase subunit 5B [Source:HGNC Symbol;Acc:HGNC:2269]
98. rps7 ENSDARG00000042566 189.60 1421.25 ribosomal protein S7 [Source:ZFIN;Acc:ZDB-GENE-040426-1718]
99. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 187.90 1408.50 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
100. rps13 ENSDARG00000036298, ENSDARG00000112818 187.90 1408.50 ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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