Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s51.

Sample reads: 133,393. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 18595.47 139406.99
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4046.47 30335.68 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 1464.65 10980.22 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. mt-nd2 ENSDARG00000063899 1356.44 10168.99 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
5. mt-atp6 ENSDARG00000063911 1237.56 9277.77 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
6. mt-co2 ENSDARG00000063908 1196.41 8969.28 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. mt-nd4 ENSDARG00000063917 1108.02 8306.63 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
8. tpma ENSDARG00000033683 920.55 6901.20 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
9. si:dkey-151g10.6 si:dkey-151g10.6 917.50 6878.34
10. actb2 ENSDARG00000037870 905.31 6786.95 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
11. ppiaa ENSDARG00000009212 795.58 5964.32 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
12. eef1a1l1 ENSDARG00000020850 786.43 5895.73 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
13. mt-co3 ENSDARG00000063912 720.90 5404.46 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
14. mt-nd1 ENSDARG00000063895 669.08 5015.98 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
15. zgc:112425 zgc:112425 659.93 4947.38
16. hmga1a ENSDARG00000028335 605.07 4536.10 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
17. actb1 ENSDARG00000037746, ENSDARG00000113649 597.44 4478.90 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
18. acta1a ENSDARG00000036371 565.44 4239.00 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
19. myl10 ENSDARG00000062592 554.77 4159.01 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
20. eef2b ENSDARG00000100371, ENSDARG00000109247 548.67 4113.28 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
21. rpl10a ENSDARG00000042905, ENSDARG00000115649 533.43 3999.03 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
22. efemp2a ENSDARG00000094324 512.10 3839.12 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
23. zgc:66286 zgc:66286 495.33 3713.40
24. mt-cyb ENSDARG00000063924 492.28 3690.54 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
25. rpl18a ENSDARG00000025073 463.32 3473.43 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
26. rpl8 ENSDARG00000014867 441.99 3313.52 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
27. rpl26 ENSDARG00000102317 435.89 3267.79 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
28. btf3 ENSDARG00000035400, ENSDARG00000116462 432.84 3244.93 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
29. rps14 ENSDARG00000036629 422.17 3164.93 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
30. hspa8 ENSDARG00000068992, ENSDARG00000114726 403.88 3027.82 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
31. rpl21 ENSDARG00000010516, ENSDARG00000110263 400.84 3005.03 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
32. rpl23 ENSDARG00000053457 397.79 2982.16 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
33. rps23 ENSDARG00000021838 396.26 2970.69 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
34. rps26l ENSDARG00000030408 393.22 2947.90 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
35. rpl36 ENSDARG00000100588 387.12 2902.17 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
36. ckmb ENSDARG00000040565 377.98 2833.65 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
37. actc1b ENSDARG00000099197 373.40 2799.31 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
38. hsp90aa1.1 ENSDARG00000010478 370.35 2776.45 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
39. rpl9 ENSDARG00000037350, ENSDARG00000112384 355.11 2662.20 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
40. rpl19 ENSDARG00000013307 339.87 2547.95 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
41. zgc:92533 zgc:92533 335.30 2513.69
42. rpl36a ENSDARG00000058105, ENSDARG00000112656 333.78 2502.29 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
43. rpl11 ENSDARG00000043509 330.73 2479.42 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
44. cyt1l ENSDARG00000036832 323.11 2422.30 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
45. rps15 ENSDARG00000070849, ENSDARG00000110979 313.96 2353.70 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
46. rps27a ENSDARG00000032725, ENSDARG00000114059 313.96 2353.70 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
47. tpm3 ENSDARG00000005162 295.67 2216.59 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
48. id1 ENSDARG00000040764 292.63 2193.80 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
49. rplp1 ENSDARG00000021864 292.63 2193.80 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
50. rps2 ENSDARG00000077291 291.10 2182.33 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
51. smyhc1 ENSDARG00000099959, ENSDARG00000115916 291.10 2182.33 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
52. rps6 ENSDARG00000019778 286.53 2148.07 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
53. eif5a ENSDARG00000017235 283.48 2125.20 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
54. tnnc2 ENSDARG00000070835, ENSDARG00000111155 283.48 2125.20 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
55. mt-co1 ENSDARG00000063905 280.43 2102.33 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
56. pcna ENSDARG00000054155 275.86 2068.07 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
57. rpl7 ENSDARG00000007320 272.81 2045.21 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
58. rpl15 ENSDARG00000009285 269.76 2022.34 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
59. rpl18 ENSDARG00000029533 263.67 1976.69 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
60. RPL29 ENSDARG00000077717 259.10 1942.43 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
61. rpl5b ENSDARG00000015862, ENSDARG00000109661 259.10 1942.43 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
62. si:dkeyp-86f7.3 si:dkeyp-86f7.3 257.57 1930.96
63. rpl6 ENSDARG00000058451 253.00 1896.70 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
64. rps20 ENSDARG00000036044 253.00 1896.70 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
65. rpl27 ENSDARG00000015128 251.48 1885.30 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
66. fabp3 ENSDARG00000023290 249.95 1873.83 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
67. ptmab ENSDARG00000101766 249.95 1873.83 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
68. rps15a ENSDARG00000010160 249.95 1873.83 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
69. rplp0 ENSDARG00000051783 248.43 1862.44 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
70. rps5 ENSDARG00000043453 245.38 1839.57 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
71. cirbp cirbp 243.85 1828.10
72. rps27.1 ENSDARG00000023298 243.85 1828.10 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
73. rps19 ENSDARG00000030602 242.33 1816.71 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
74. rps4x ENSDARG00000014690 240.81 1805.31 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
75. col1a1a ENSDARG00000012405, ENSDARG00000116113 231.66 1736.71 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
76. COX5B_1 ENSDARG00000015978 217.95 1633.93 cytochrome c oxidase subunit 5B [Source:HGNC Symbol;Acc:HGNC:2269]
77. rps9 ENSDARG00000011405, ENSDARG00000113248 217.95 1633.93 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
78. rpl35 ENSDARG00000018334 214.90 1611.07 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
79. AL954137.2 ENSDARG00000114408 213.37 1599.60
80. ckma ENSDARG00000035327, ENSDARG00000114671 211.85 1588.20 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
81. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 211.85 1588.20 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
82. mylz3 ENSDARG00000017441 207.28 1553.94 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
83. rps3 ENSDARG00000103007 207.28 1553.94 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
84. cd81 cd81 205.75 1542.47
85. rpl24 ENSDARG00000099104 204.23 1531.08 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
86. pabpc1a ENSDARG00000017219 202.70 1519.61 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
87. zgc:123194 zgc:123194 199.66 1496.82
88. atp5g3b 196.61 1473.95 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
89. si:ch1073-429i10.3 196.61 1473.95 si:ch1073-429i10.3, transcript variant X2
90. rpl39 ENSDARG00000036316, ENSDARG00000117167 195.08 1462.48 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
91. krt8 ENSDARG00000058358, ENSDARG00000109279 193.56 1451.09 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
92. cfl1l ENSDARG00000012972 192.04 1439.69 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
93. rpsa ENSDARG00000019181 188.99 1416.82 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
94. zgc:113413 zgc:113413 188.99 1416.82
95. rps10 ENSDARG00000034897 187.46 1405.35 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
96. gnb2l1 185.94 1393.96 guanine nucleotide binding protein (G protein), beta polypeptide 2-like 1
97. rpl14 ENSDARG00000103433 182.89 1371.09 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
98. rplp2l ENSDARG00000011201 182.89 1371.09 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
99. ttna ttna 178.32 1336.83
100. rpl23a ENSDARG00000006316 175.27 1313.97 ribosomal protein L23a [Source:ZFIN;Acc:ZDB-GENE-030131-7479]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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