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Experiment Zebrafish_28hpf_whole1, section s47.

Sample reads: 133,420. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 30031.41 225102.68
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3027.44 22692.40 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 1787.13 13395.57 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. mt-nd2 ENSDARG00000063899 1604.86 12029.35 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
5. mt-co2 ENSDARG00000063908 1508.48 11306.92 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. si:dkey-151g10.6 si:dkey-151g10.6 1271.74 9532.42
7. mt-atp6 ENSDARG00000063911 1185.84 8888.55 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
8. mt-nd4 ENSDARG00000063917 1078.99 8087.65 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
9. tpma ENSDARG00000033683 955.37 7161.05 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
10. rpl23 ENSDARG00000053457 737.48 5527.84 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
11. ppiaa ENSDARG00000009212 701.86 5260.84 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
12. eef1a1l1 ENSDARG00000020850 687.20 5150.96 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
13. mt-nd1 ENSDARG00000063895 687.20 5150.96 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
14. mt-co3 ENSDARG00000063912 664.15 4978.19 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
15. actb2 ENSDARG00000037870 643.20 4821.15 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
16. rpl10a ENSDARG00000042905, ENSDARG00000115649 569.87 4271.50 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
17. rps26l ENSDARG00000030408 542.64 4067.40 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
18. zgc:112425 zgc:112425 542.64 4067.40
19. rpl21 ENSDARG00000010516, ENSDARG00000110263 509.11 3816.07 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
20. rpl18a ENSDARG00000025073 507.02 3800.41 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
21. myl10 ENSDARG00000062592 469.31 3517.75 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
22. rpl8 ENSDARG00000014867 450.45 3376.38 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
23. rps23 ENSDARG00000021838 448.36 3360.72 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
24. ckmb ENSDARG00000040565 439.97 3297.83 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
25. mt-cyb ENSDARG00000063924 439.97 3297.83 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
26. rps14 ENSDARG00000036629 431.59 3235.02 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
27. acta1a ENSDARG00000036371 427.40 3203.61 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
28. rpl9 ENSDARG00000037350, ENSDARG00000112384 427.40 3203.61 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
29. rps27a ENSDARG00000032725, ENSDARG00000114059 416.93 3125.13 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
30. actb1 ENSDARG00000037746, ENSDARG00000113649 414.83 3109.39 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
31. hmga1a ENSDARG00000028335 414.83 3109.39 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
32. rpl11 ENSDARG00000043509 398.07 2983.76 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
33. rps15 ENSDARG00000070849, ENSDARG00000110979 393.88 2952.36 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
34. rpl26 ENSDARG00000102317 387.60 2905.28 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
35. rpl36a ENSDARG00000058105, ENSDARG00000112656 387.60 2905.28 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
36. rpl19 ENSDARG00000013307 381.31 2858.14 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
37. rpl36 ENSDARG00000100588 381.31 2858.14 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
38. hsp90aa1.1 ENSDARG00000010478 360.36 2701.11 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
39. rps10 ENSDARG00000034897 358.27 2685.44 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
40. eef2b ENSDARG00000100371, ENSDARG00000109247 349.88 2622.55 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
41. hspa8 ENSDARG00000068992, ENSDARG00000114726 341.50 2559.74 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
42. actc1b ENSDARG00000099197 337.31 2528.33 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
43. btf3 ENSDARG00000035400, ENSDARG00000116462 333.12 2496.93 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
44. zgc:66286 zgc:66286 333.12 2496.93
45. rpl27 ENSDARG00000015128 328.93 2465.52 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
46. RPL29 ENSDARG00000077717 326.84 2449.85 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
47. faua ENSDARG00000099022 326.84 2449.85 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
48. rps20 ENSDARG00000036044 324.74 2434.11 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
49. rps5 ENSDARG00000043453 318.46 2387.04 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
50. rps12 ENSDARG00000036875, ENSDARG00000115157 314.27 2355.63 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
51. tnnc2 ENSDARG00000070835, ENSDARG00000111155 305.89 2292.82 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
52. zgc:92533 zgc:92533 305.89 2292.82
53. rps4x ENSDARG00000014690 303.79 2277.08 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
54. rps15a ENSDARG00000010160 284.94 2135.79 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
55. rps19 ENSDARG00000030602 284.94 2135.79 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
56. rps2 ENSDARG00000077291 284.94 2135.79 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
57. hbae3 ENSDARG00000079305 280.75 2104.38 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
58. cyt1l ENSDARG00000036832 278.65 2088.64 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
59. rpl39 ENSDARG00000036316, ENSDARG00000117167 276.56 2072.98 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
60. rplp1 ENSDARG00000021864 276.56 2072.98 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
61. ckma ENSDARG00000035327, ENSDARG00000114671 274.46 2057.24 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
62. rpl35 ENSDARG00000018334 272.37 2041.57 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
63. rpl6 ENSDARG00000058451 270.27 2025.83 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
64. hbbe3 ENSDARG00000038147, ENSDARG00000109344 263.98 1978.68 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
65. rpl18 ENSDARG00000029533 259.79 1947.28 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
66. rpl15 ENSDARG00000009285 257.70 1931.61 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
67. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 255.60 1915.87 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
68. mylz3 ENSDARG00000017441 255.60 1915.87 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
69. rps27.1 ENSDARG00000023298 253.51 1900.20 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
70. rps6 ENSDARG00000019778 253.51 1900.20 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
71. si:dkeyp-86f7.3 si:dkeyp-86f7.3 249.32 1868.80
72. efemp2a ENSDARG00000094324 247.22 1853.06 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
73. rpl24 ENSDARG00000099104 247.22 1853.06 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
74. rplp2l ENSDARG00000011201 245.13 1837.39 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
75. fabp3 ENSDARG00000023290 240.94 1805.98 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
76. rps24 ENSDARG00000039347 234.65 1758.84 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
77. rps3 ENSDARG00000103007 234.65 1758.84 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
78. eif5a ENSDARG00000017235 232.56 1743.17 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
79. rpl7 ENSDARG00000007320 226.27 1696.02 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
80. RPL37A RPL37A 222.08 1664.62
81. rpl23a ENSDARG00000006316 217.89 1633.21 ribosomal protein L23a [Source:ZFIN;Acc:ZDB-GENE-030131-7479]
82. id1 ENSDARG00000040764 215.80 1617.55 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
83. rps7 ENSDARG00000042566 215.80 1617.55 ribosomal protein S7 [Source:ZFIN;Acc:ZDB-GENE-040426-1718]
84. smyhc1 ENSDARG00000099959, ENSDARG00000115916 215.80 1617.55 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
85. rps13 ENSDARG00000036298, ENSDARG00000112818 213.70 1601.80 ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]
86. ptmab ENSDARG00000101766 211.61 1586.14 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
87. rpl35a ENSDARG00000088030 211.61 1586.14 ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-040718-190]
88. COX5B_1 ENSDARG00000015978 209.51 1570.40 cytochrome c oxidase subunit 5B [Source:HGNC Symbol;Acc:HGNC:2269]
89. rplp0 ENSDARG00000051783 209.51 1570.40 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
90. si:dkey-150i13.2 ENSDARG00000071052 209.51 1570.40 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
91. rpl5b ENSDARG00000015862, ENSDARG00000109661 207.42 1554.73 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
92. ttna ttna 205.32 1538.99
93. aldoab ENSDARG00000034470 203.23 1523.33 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
94. hsp90ab1 ENSDARG00000029150 201.13 1507.58 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
95. rps29 ENSDARG00000041232 201.13 1507.58 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
96. AC024175.17 AC024175.17 196.94 1476.18
97. cirbp cirbp 196.94 1476.18
98. krt8 ENSDARG00000058358, ENSDARG00000109279 194.85 1460.51 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
99. rpl14 ENSDARG00000103433 194.85 1460.51 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
100. mt-co1 ENSDARG00000063905 192.75 1444.77 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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