Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s4.

Sample reads: 133,401. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 13655.36 102362.98
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3939.05 29527.81 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. hmga1a ENSDARG00000028335 2757.33 20669.43 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
4. mt-nd2 ENSDARG00000063899 1706.92 12795.37 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
5. actb2 ENSDARG00000037870 1444.32 10826.88 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
6. eef2b ENSDARG00000100371, ENSDARG00000109247 1444.32 10826.88 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
7. ppiaa ENSDARG00000009212 1313.02 9842.63 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
8. tmsb4x ENSDARG00000077777 1181.71 8858.31 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
9. top1l ENSDARG00000070545 1181.71 8858.31 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
10. zgc:112425 zgc:112425 1181.71 8858.31
11. mt-co3 ENSDARG00000063912 1050.41 7874.06 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
12. mt-nd4 ENSDARG00000063917 1050.41 7874.06 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
13. pcna ENSDARG00000054155 1050.41 7874.06 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
14. eef1a1l1 ENSDARG00000020850 919.11 6889.81 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
15. mt-atp6 ENSDARG00000063911 919.11 6889.81 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
16. hmgn2 ENSDARG00000099572 787.81 5905.56 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
17. mt-co2 ENSDARG00000063908 787.81 5905.56 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
18. rpl8 ENSDARG00000014867 787.81 5905.56 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
19. ptmab ENSDARG00000101766 656.51 4921.31 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
20. si:dkey-151g10.6 si:dkey-151g10.6 656.51 4921.31
21. ELOVL4 ELOVL4 525.21 3937.07
22. actb1 ENSDARG00000037746, ENSDARG00000113649 525.21 3937.07 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
23. cirbp cirbp 525.21 3937.07
24. khdrbs1a ENSDARG00000052856 525.21 3937.07 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
25. pcbp2 ENSDARG00000099039 525.21 3937.07 poly(rC) binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-030131-563]
26. rps20 ENSDARG00000036044 525.21 3937.07 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
27. rps26l ENSDARG00000030408 525.21 3937.07 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
28. rps3 ENSDARG00000103007 525.21 3937.07 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
29. rps5 ENSDARG00000043453 525.21 3937.07 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
30. si:dkeyp-86f7.3 si:dkeyp-86f7.3 525.21 3937.07
31. ccnd1 ENSDARG00000101637 393.90 2952.74 cyclin D1 [Source:ZFIN;Acc:ZDB-GENE-980526-176]
32. dynlt1 ENSDARG00000045909 393.90 2952.74 dynein, light chain, Tctex-type 1 [Source:ZFIN;Acc:ZDB-GENE-041210-9]
33. eif5a2 ENSDARG00000056186 393.90 2952.74 eukaryotic translation initiation factor 5A2 [Source:ZFIN;Acc:ZDB-GENE-040426-2405]
34. fabp3 ENSDARG00000023290 393.90 2952.74 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
35. h3f3d ENSDARG00000045248 393.90 2952.74 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
36. mt-nd5 ENSDARG00000063921 393.90 2952.74 NADH dehydrogenase 5, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-12]
37. nono ENSDARG00000020482, ENSDARG00000115783 393.90 2952.74 non-POU domain containing, octamer-binding [Source:ZFIN;Acc:ZDB-GENE-030131-713]
38. rpl10a ENSDARG00000042905, ENSDARG00000115649 393.90 2952.74 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
39. rpl18 ENSDARG00000029533 393.90 2952.74 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
40. rpl18a ENSDARG00000025073 393.90 2952.74 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
41. rpl24 ENSDARG00000099104 393.90 2952.74 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
42. rpl35a ENSDARG00000088030 393.90 2952.74 ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-040718-190]
43. rpl36a ENSDARG00000058105, ENSDARG00000112656 393.90 2952.74 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
44. rplp0 ENSDARG00000051783 393.90 2952.74 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
45. rps15 ENSDARG00000070849, ENSDARG00000110979 393.90 2952.74 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
46. rps15a ENSDARG00000010160 393.90 2952.74 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
47. rps4x ENSDARG00000014690 393.90 2952.74 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
48. rps6 ENSDARG00000019778 393.90 2952.74 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
49. rps9 ENSDARG00000011405, ENSDARG00000113248 393.90 2952.74 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
50. seta ENSDARG00000031495 393.90 2952.74 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
51. uba52 ENSDARG00000041435 393.90 2952.74 ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:ZFIN;Acc:ZDB-GENE-051023-7]
52. ARHGAP23 ARHGAP23 262.60 1968.50
53. CABZ01081490.1 ENSDARG00000111653 262.60 1968.50
54. COLGALT1 ENSDARG00000073974 262.60 1968.50 collagen beta(1-O)galactosyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-070720-6]
55. MAF1 ENSDARG00000013122 262.60 1968.50 MAF1 homolog, negative regulator of RNA polymerase III [Source:ZFIN;Acc:ZDB-GENE-040426-2788]
56. RPL29 ENSDARG00000077717 262.60 1968.50 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
57. RPS17L RPS17L 262.60 1968.50
58. TUBA1A ENSDARG00000001889 262.60 1968.50 tubulin, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-090507-4]
59. actc1b ENSDARG00000099197 262.60 1968.50 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
60. adh5 ENSDARG00000080010, ENSDARG00000111574 262.60 1968.50 alcohol dehydrogenase 5 [Source:ZFIN;Acc:ZDB-GENE-011003-1]
61. alyref ENSDARG00000077732 262.60 1968.50 Aly/REF export factor [Source:ZFIN;Acc:ZDB-GENE-070928-29]
62. ankhd1 ENSDARG00000077860 262.60 1968.50 ankyrin repeat and KH domain containing 1 [Source:ZFIN;Acc:ZDB-GENE-090421-1]
63. apoc1l apoc1l 262.60 1968.50
64. arih2 ENSDARG00000012848 262.60 1968.50 ariadne homolog 2 (Drosophila) [Source:ZFIN;Acc:ZDB-GENE-040426-2158]
65. atp2a1 ENSDARG00000020574 262.60 1968.50 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
66. atpif1a 262.60 1968.50 ATPase inhibitory factor 1a
67. baz1b ENSDARG00000102832, ENSDARG00000114866 262.60 1968.50 bromodomain adjacent to zinc finger domain, 1B [Source:ZFIN;Acc:ZDB-GENE-010328-16]
68. brd4 ENSDARG00000078904 262.60 1968.50 bromodomain containing 4 [Source:ZFIN;Acc:ZDB-GENE-030131-267]
69. btf3 ENSDARG00000035400, ENSDARG00000116462 262.60 1968.50 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
70. carm1 ENSDARG00000018698 262.60 1968.50 coactivator-associated arginine methyltransferase 1 [Source:ZFIN;Acc:ZDB-GENE-040724-77]
71. cdc14b ENSDARG00000021483 262.60 1968.50 cell division cycle 14B [Source:ZFIN;Acc:ZDB-GENE-040426-820]
72. cdh2 ENSDARG00000018693, ENSDARG00000117201 262.60 1968.50 cadherin 2, type 1, N-cadherin (neuronal) [Source:ZFIN;Acc:ZDB-GENE-990415-171]
73. cdv3 ENSDARG00000023028 262.60 1968.50 carnitine deficiency-associated gene expressed in ventricle 3 [Source:ZFIN;Acc:ZDB-GENE-030131-6034]
74. coro7 ENSDARG00000089616 262.60 1968.50 coronin 7 [Source:ZFIN;Acc:ZDB-GENE-050706-137]
75. cox4i1 ENSDARG00000032970 262.60 1968.50 cytochrome c oxidase subunit 4I1 [Source:ZFIN;Acc:ZDB-GENE-030131-5175]
76. cplx2l ENSDARG00000018997 262.60 1968.50 complexin 2, like [Source:ZFIN;Acc:ZDB-GENE-040718-160]
77. cyc1 ENSDARG00000038075 262.60 1968.50 cytochrome c-1 [Source:ZFIN;Acc:ZDB-GENE-031105-2]
78. cyt1l ENSDARG00000036832 262.60 1968.50 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
79. ddost ENSDARG00000037318 262.60 1968.50 dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit (non-catalytic) [Source:ZFIN;Acc:ZDB-GENE-040426-2147]
80. dsc2l ENSDARG00000039677 262.60 1968.50 desmocollin 2 like [Source:ZFIN;Acc:ZDB-GENE-031116-55]
81. efnb3b ENSDARG00000042277 262.60 1968.50 ephrin-B3b [Source:ZFIN;Acc:ZDB-GENE-010618-3]
82. eif3ea ENSDARG00000090697 262.60 1968.50 eukaryotic translation initiation factor 3, subunit E, a [Source:ZFIN;Acc:ZDB-GENE-030131-3827]
83. eif4g2b ENSDARG00000057167 262.60 1968.50 eukaryotic translation initiation factor 4, gamma 2b [Source:ZFIN;Acc:ZDB-GENE-030131-6550]
84. ercc2 ENSDARG00000021985 262.60 1968.50 excision repair cross-complementation group 2 [Source:ZFIN;Acc:ZDB-GENE-040426-997]
85. faf1 ENSDARG00000022418 262.60 1968.50 Fas (TNFRSF6) associated factor 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2863]
86. faua ENSDARG00000099022 262.60 1968.50 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
87. fzr1 fzr1 262.60 1968.50
88. gfap ENSDARG00000025301 262.60 1968.50 glial fibrillary acidic protein [Source:ZFIN;Acc:ZDB-GENE-990914-3]
89. gpbp1l1 ENSDARG00000075569, ENSDARG00000112704 262.60 1968.50 GC-rich promoter binding protein 1-like 1 [Source:ZFIN;Acc:ZDB-GENE-031118-220]
90. her15.1 ENSDARG00000054560, ENSDARG00000054562 262.60 1968.50 hairy and enhancer of split-related 15, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030707-2]
91. hif1al ENSDARG00000100826 262.60 1968.50 hypoxia inducible factor 1 subunit alpha, like [Source:ZFIN;Acc:ZDB-GENE-040426-1315]
92. hnrnpul1 ENSDARG00000040564 262.60 1968.50 heterogeneous nuclear ribonucleoprotein U-like 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2432]
93. hnrpdl 262.60 1968.50 heterogeneous nuclear ribonucleoprotein D-like, transcript variant X2
94. hsp90ab1 ENSDARG00000029150 262.60 1968.50 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
95. hypk ENSDARG00000059725 262.60 1968.50 huntingtin interacting protein K [Source:ZFIN;Acc:ZDB-GENE-080515-6]
96. id1 ENSDARG00000040764 262.60 1968.50 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
97. kif5ba ENSDARG00000074131, ENSDARG00000103394 262.60 1968.50 kinesin family member 5B, a [Source:ZFIN;Acc:ZDB-GENE-070629-2]
98. kpna3 ENSDARG00000052641 262.60 1968.50 karyopherin alpha 3 (importin alpha 4) [Source:ZFIN;Acc:ZDB-GENE-030616-541]
99. marcksl1a ENSDARG00000039034 262.60 1968.50 MARCKS-like 1a [Source:ZFIN;Acc:ZDB-GENE-040426-2146]
100. mt-co1 ENSDARG00000063905 262.60 1968.50 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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