Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s39.

Sample reads: 133,393. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 22957.25 172102.45
2. krt4 ENSDARG00000017624, ENSDARG00000115790 2560.33 19193.90 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2210.64 16572.39 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. mt-co2 ENSDARG00000063908 1522.39 11412.82 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
5. ckmb ENSDARG00000040565 1367.59 10252.34 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
6. mt-nd2 ENSDARG00000063899 1363.14 10218.98 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
7. mt-atp6 ENSDARG00000063911 1346.43 10093.71 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
8. tmsb4x ENSDARG00000077777 1251.77 9384.08 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
9. ckma ENSDARG00000035327, ENSDARG00000114671 1154.88 8657.73 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
10. mt-nd4 ENSDARG00000063917 1083.60 8123.37 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
11. actc1b ENSDARG00000099197 786.25 5894.24 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
12. mylz3 ENSDARG00000017441 760.64 5702.25 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
13. atp2a1 ENSDARG00000020574 743.93 5576.98 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
14. apoa1b ENSDARG00000101324 722.77 5418.35 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
15. mt-co3 ENSDARG00000063912 718.32 5384.99 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
16. eef1a1l1 ENSDARG00000020850 674.89 5059.41 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
17. mt-nd1 ENSDARG00000063895 652.61 4892.39 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
18. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 622.54 4666.96 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
19. zgc:161979_1 zgc:161979_1 584.68 4383.14
20. apoa2 ENSDARG00000015866 565.75 4241.23 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
21. tnnc2 ENSDARG00000070835, ENSDARG00000111155 554.61 4157.72 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
22. zgc:112425 zgc:112425 546.81 4099.24
23. actb2 ENSDARG00000037870 544.59 4082.60 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
24. apobb apobb 530.11 3974.05
25. apoc1l apoc1l 528.99 3965.65
26. mt-cyb ENSDARG00000063924 518.97 3890.54 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
27. si:dkey-151g10.6 si:dkey-151g10.6 516.74 3873.82
28. ppiaa ENSDARG00000009212 513.40 3848.78 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
29. acta1a ENSDARG00000036371 501.15 3756.95 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
30. rpl10a ENSDARG00000042905, ENSDARG00000115649 497.81 3731.91 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
31. zgc:161979 zgc:161979 486.67 3648.39
32. apoeb ENSDARG00000040295 466.63 3498.16 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
33. myhz1.3 ENSDARG00000067997 392.01 2938.76 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
34. rpl18a ENSDARG00000025073 388.67 2913.72 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
35. ttna ttna 380.88 2855.32
36. rpl23 ENSDARG00000053457 370.85 2780.13 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
37. hmga1a ENSDARG00000028335 364.17 2730.05 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
38. rps26l ENSDARG00000030408 357.49 2679.98 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
39. actb1 ENSDARG00000037746, ENSDARG00000113649 349.69 2621.50 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
40. hspa8 ENSDARG00000068992, ENSDARG00000114726 344.12 2579.75 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
41. btf3 ENSDARG00000035400, ENSDARG00000116462 343.01 2571.43 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
42. eef2b ENSDARG00000100371, ENSDARG00000109247 343.01 2571.43 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
43. acta1b ENSDARG00000055618 334.10 2504.63 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
44. ttnb ttnb 332.99 2496.31
45. myl10 ENSDARG00000062592 312.94 2346.00 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
46. rps14 ENSDARG00000036629 309.60 2320.96 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
47. lama2 ENSDARG00000099390 304.03 2279.21 laminin, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-060119-1]
48. rpl8 ENSDARG00000014867 295.12 2212.41 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
49. tnnt3a ENSDARG00000030270 292.90 2195.77 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
50. rps20 ENSDARG00000036044 291.78 2187.37 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
51. rpl36 ENSDARG00000100588 288.44 2162.33 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
52. rpl36a ENSDARG00000058105, ENSDARG00000112656 288.44 2162.33 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
53. hsp90aa1.1 ENSDARG00000010478 286.21 2145.62 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
54. rpl9 ENSDARG00000037350, ENSDARG00000112384 286.21 2145.62 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
55. rpl21 ENSDARG00000010516, ENSDARG00000110263 285.10 2137.29 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
56. zgc:66286 zgc:66286 283.99 2128.97
57. aldoab ENSDARG00000034470 280.65 2103.93 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
58. rps15 ENSDARG00000070849, ENSDARG00000110979 277.30 2078.82 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
59. fabp3 ENSDARG00000023290 272.85 2045.46 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
60. pvalb2 ENSDARG00000002768, ENSDARG00000114085 271.74 2037.14 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
61. rps23 ENSDARG00000021838 271.74 2037.14 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
62. rps27a ENSDARG00000032725, ENSDARG00000114059 271.74 2037.14 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
63. eif5a ENSDARG00000017235 267.28 2003.70 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
64. rpl26 ENSDARG00000102317 267.28 2003.70 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
65. rplp1 ENSDARG00000021864 263.94 1978.67 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
66. rpl19 ENSDARG00000013307 259.49 1945.31 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
67. RPL29 ENSDARG00000077717 255.03 1911.87 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
68. apoa1a ENSDARG00000012076, ENSDARG00000110395 249.46 1870.11 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
69. myl1 ENSDARG00000014196 248.35 1861.79 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
70. myhz2 ENSDARG00000012944 237.21 1778.28 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
71. rps6 ENSDARG00000019778 237.21 1778.28 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
72. rps3 ENSDARG00000103007 226.08 1694.84 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
73. rps15a ENSDARG00000010160 224.96 1686.45 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
74. cyt1l ENSDARG00000036832 222.73 1669.73 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
75. rpl11 ENSDARG00000043509 222.73 1669.73 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
76. rpl6 ENSDARG00000058451 222.73 1669.73 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
77. tnni2b.1 ENSDARG00000035958 222.73 1669.73 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
78. apoa4 apoa4 221.62 1661.41
79. rps2 ENSDARG00000077291 219.39 1644.69 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
80. rpsa ENSDARG00000019181 219.39 1644.69 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
81. rpl27 ENSDARG00000015128 214.94 1611.33 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
82. rps5 ENSDARG00000043453 213.83 1603.01 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
83. mt-co1 ENSDARG00000063905 212.71 1594.61 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
84. rbp4 ENSDARG00000101199 209.37 1569.57 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
85. rpl39 ENSDARG00000036316, ENSDARG00000117167 204.92 1536.21 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
86. si:dkey-150i13.2 ENSDARG00000071052 202.69 1519.50 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
87. si:dkeyp-86f7.3 si:dkeyp-86f7.3 202.69 1519.50
88. rpl18 ENSDARG00000029533 200.46 1502.78 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
89. ptmab ENSDARG00000101766 194.89 1461.02 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
90. tnni2a.4 ENSDARG00000029069 194.89 1461.02 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
91. atp5g3b 192.67 1444.38 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
92. tpm3 ENSDARG00000005162 191.55 1435.98 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
93. zgc:92533 zgc:92533 185.98 1394.23
94. COX5B_1 ENSDARG00000015978 184.87 1385.91 cytochrome c oxidase subunit 5B [Source:HGNC Symbol;Acc:HGNC:2269]
95. hsp90ab1 ENSDARG00000029150 181.53 1360.87 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
96. rpl35 ENSDARG00000018334 181.53 1360.87 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
97. rpl7 ENSDARG00000007320 180.41 1352.47 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
98. gapdh ENSDARG00000043457 179.30 1344.15 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
99. AC024175.17 AC024175.17 177.07 1327.43
100. mt-nd3 ENSDARG00000063914 175.96 1319.11 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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