Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s38.

Sample reads: 133,392. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 11453.81 85866.80
2. krt4 ENSDARG00000017624, ENSDARG00000115790 3767.75 28246.03 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 3010.07 22565.86 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckmb ENSDARG00000040565 2036.26 15265.41 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. mt-nd2 ENSDARG00000063899 1934.27 14500.82 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
6. mt-co2 ENSDARG00000063908 1929.41 14464.38 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. tmsb4x ENSDARG00000077777 1890.55 14173.06 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
8. mt-atp6 ENSDARG00000063911 1729.06 12962.40 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
9. mt-nd4 ENSDARG00000063917 1202.09 9011.82 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
10. mt-co3 ENSDARG00000063912 1069.73 8019.54 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
11. ckma ENSDARG00000035327, ENSDARG00000114671 1067.31 8001.40 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
12. mt-nd1 ENSDARG00000063895 932.53 6990.98 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
13. si:dkey-151g10.6 si:dkey-151g10.6 885.17 6635.93
14. atp2a1 ENSDARG00000020574 842.67 6317.32 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
15. zgc:161979_1 zgc:161979_1 781.96 5862.19
16. zgc:112425 zgc:112425 745.54 5589.16
17. apoa1b ENSDARG00000101324 707.89 5306.90 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
18. actc1b ENSDARG00000099197 692.11 5188.60 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
19. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 665.40 4988.36 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
20. mylz3 ENSDARG00000017441 615.61 4615.10 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
21. actb2 ENSDARG00000037870 613.19 4596.96 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
22. eef1a1l1 ENSDARG00000020850 599.83 4496.80 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
23. zgc:161979 zgc:161979 596.19 4469.51
24. mt-cyb ENSDARG00000063924 547.62 4105.39 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
25. ppiaa ENSDARG00000009212 540.33 4050.74 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
26. apoa2 ENSDARG00000015866 537.90 4032.52 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
27. apoc1l apoc1l 526.97 3950.58
28. rpl10a ENSDARG00000042905, ENSDARG00000115649 509.98 3823.21 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
29. rpl18a ENSDARG00000025073 490.55 3677.55 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
30. tnnc2 ENSDARG00000070835, ENSDARG00000111155 482.05 3613.83 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
31. acta1a ENSDARG00000036371 475.98 3568.32 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
32. myhz1.3 ENSDARG00000067997 471.12 3531.89 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
33. rps26l ENSDARG00000030408 471.12 3531.89 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
34. fabp3 ENSDARG00000023290 463.84 3477.31 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
35. eef2b ENSDARG00000100371, ENSDARG00000109247 448.05 3358.94 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
36. apoeb ENSDARG00000040295 445.62 3340.72 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
37. apobb apobb 423.77 3176.91
38. rpl36 ENSDARG00000100588 416.48 3122.26 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
39. hmga1a ENSDARG00000028335 412.84 3094.97 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
40. hspa8 ENSDARG00000068992, ENSDARG00000114726 410.41 3076.76 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
41. myl10 ENSDARG00000062592 383.70 2876.52 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
42. rps6 ENSDARG00000019778 342.41 2566.98 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
43. rps23 ENSDARG00000021838 329.06 2466.89 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
44. pvalb2 ENSDARG00000002768, ENSDARG00000114085 324.20 2430.46 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
45. ttna ttna 324.20 2430.46
46. zgc:66286 zgc:66286 324.20 2430.46
47. rps15 ENSDARG00000070849, ENSDARG00000110979 322.98 2421.31 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
48. aldoab ENSDARG00000034470 312.06 2339.45 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
49. actb1 ENSDARG00000037746, ENSDARG00000113649 302.34 2266.58 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
50. rpl23 ENSDARG00000053457 302.34 2266.58 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
51. rpl8 ENSDARG00000014867 298.70 2239.29 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
52. rps27a ENSDARG00000032725, ENSDARG00000114059 296.27 2221.07 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
53. myl1 ENSDARG00000014196 291.41 2184.64 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
54. acta1b ENSDARG00000055618 280.49 2102.77 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
55. apoa1a ENSDARG00000012076, ENSDARG00000110395 280.49 2102.77 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
56. eif5a ENSDARG00000017235 273.20 2048.12 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
57. btf3 ENSDARG00000035400, ENSDARG00000116462 270.77 2029.91 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
58. rps20 ENSDARG00000036044 270.77 2029.91 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
59. rps14 ENSDARG00000036629 261.06 1957.11 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
60. tnnt3b ENSDARG00000068457 261.06 1957.11 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
61. rps3 ENSDARG00000103007 258.63 1938.89 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
62. myhz2 ENSDARG00000012944 256.20 1920.68 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
63. tnni2a.4 ENSDARG00000029069 250.13 1875.17 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
64. faua ENSDARG00000099022 248.92 1866.10 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
65. hsp90aa1.1 ENSDARG00000010478 248.92 1866.10 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
66. tpm3 ENSDARG00000005162 247.70 1856.95 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
67. rpl19 ENSDARG00000013307 241.63 1811.45 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
68. rpl21 ENSDARG00000010516, ENSDARG00000110263 240.42 1802.38 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
69. rpl26 ENSDARG00000102317 234.35 1756.87 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
70. rpl9 ENSDARG00000037350, ENSDARG00000112384 234.35 1756.87 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
71. rpl35 ENSDARG00000018334 230.70 1729.51 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
72. tnni2b.1 ENSDARG00000035958 230.70 1729.51 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
73. mt-co1 ENSDARG00000063905 228.27 1711.29 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
74. rpl39 ENSDARG00000036316, ENSDARG00000117167 227.06 1702.22 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
75. tnnt3a ENSDARG00000030270 220.99 1656.72 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
76. lama2 ENSDARG00000099390 218.56 1638.50 laminin, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-060119-1]
77. rps2 ENSDARG00000077291 216.13 1620.28 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
78. cirbp cirbp 214.92 1611.21
79. rbp4 ENSDARG00000101199 210.06 1574.78 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
80. cyt1l ENSDARG00000036832 208.85 1565.70 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
81. apoa4 apoa4 206.42 1547.49
82. rpl36a ENSDARG00000058105, ENSDARG00000112656 205.20 1538.34 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
83. RPL29 ENSDARG00000077717 203.99 1529.27 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
84. zgc:92533 zgc:92533 202.78 1520.20
85. rbfox1l ENSDARG00000021184, ENSDARG00000111700 201.56 1511.05 RNA binding fox-1 homolog 1, like [Source:ZFIN;Acc:ZDB-GENE-040923-2]
86. ttnb ttnb 196.70 1474.62
87. rpl6 ENSDARG00000058451 195.49 1465.55 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
88. atp5g3b 191.85 1438.26 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
89. rpl11 ENSDARG00000043509 191.85 1438.26 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
90. smyhc1 ENSDARG00000099959, ENSDARG00000115916 191.85 1438.26 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
91. rps15a ENSDARG00000010160 186.99 1401.82 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
92. pcna ENSDARG00000054155 184.56 1383.61 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
93. ATP5B 182.13 1365.39 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
94. si:dkeyp-86f7.3 si:dkeyp-86f7.3 182.13 1365.39
95. tmem38a ENSDARG00000024047 179.71 1347.25 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
96. uba52 ENSDARG00000041435 179.71 1347.25 ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:ZFIN;Acc:ZDB-GENE-051023-7]
97. rps18 ENSDARG00000100392 178.49 1338.10 ribosomal protein S18 [Source:ZFIN;Acc:ZDB-GENE-020419-20]
98. RPL37A RPL37A 174.85 1310.81
99. rps27.1 ENSDARG00000023298 174.85 1310.81 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
100. rps9 ENSDARG00000011405, ENSDARG00000113248 173.63 1301.67 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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