Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s36.

Sample reads: 133,418. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 23599.80 176891.90
2. krt4 ENSDARG00000017624, ENSDARG00000115790 2753.52 20638.96 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2225.09 16678.12 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckmb ENSDARG00000040565 1517.28 11372.75 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. mt-nd2 ENSDARG00000063899 1494.62 11202.90 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
6. mt-atp6 ENSDARG00000063911 1253.07 9392.37 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
7. tmsb4x ENSDARG00000077777 1209.68 9067.14 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
8. mt-nd4 ENSDARG00000063917 1179.25 8839.05 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
9. mt-co2 ENSDARG00000063908 1097.00 8222.55 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
10. actc1b ENSDARG00000099197 929.93 6970.27 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
11. atp2a1 ENSDARG00000020574 899.49 6742.11 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
12. ckma ENSDARG00000035327, ENSDARG00000114671 799.76 5994.59 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
13. actb2 ENSDARG00000037870 722.05 5412.11 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
14. mt-nd1 ENSDARG00000063895 721.41 5407.32 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
15. eef1a1l1 ENSDARG00000020850 707.81 5305.38 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
16. mylz3 ENSDARG00000017441 696.15 5217.98 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
17. mt-co3 ENSDARG00000063912 689.03 5164.61 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
18. zgc:112425 zgc:112425 645.64 4839.38
19. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 615.85 4616.09 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
20. myhz1.3 ENSDARG00000067997 527.78 3955.97 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
21. mt-cyb ENSDARG00000063924 522.60 3917.14 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
22. apoa1b ENSDARG00000101324 505.76 3790.92 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
23. ttna ttna 499.29 3742.42
24. acta1a ENSDARG00000036371 488.92 3664.69 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
25. si:dkey-151g10.6 si:dkey-151g10.6 483.74 3625.87
26. hmga1a ENSDARG00000028335 474.03 3553.08 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
27. zgc:161979_1 zgc:161979_1 472.09 3538.54
28. eef2b ENSDARG00000100371, ENSDARG00000109247 470.14 3523.93 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
29. apoc1l apoc1l 451.36 3383.16
30. tnnc2 ENSDARG00000070835, ENSDARG00000111155 450.72 3378.36 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
31. ppiaa ENSDARG00000009212 436.47 3271.55 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
32. lama2 ENSDARG00000099390 398.26 2985.15 laminin, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-060119-1]
33. ttnb ttnb 371.71 2786.15
34. rpl10a ENSDARG00000042905, ENSDARG00000115649 369.77 2771.60 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
35. acta1b ENSDARG00000055618 360.70 2703.62 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
36. zgc:161979 zgc:161979 360.70 2703.62
37. actb1 ENSDARG00000037746, ENSDARG00000113649 356.17 2669.67 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
38. apoa2 ENSDARG00000015866 351.64 2635.71 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
39. hspa8 ENSDARG00000068992, ENSDARG00000114726 349.69 2621.10 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
40. zgc:66286 zgc:66286 347.75 2606.55
41. pvalb2 ENSDARG00000002768, ENSDARG00000114085 339.33 2543.44 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
42. rpl23 ENSDARG00000053457 336.74 2524.03 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
43. myl10 ENSDARG00000062592 324.44 2431.83 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
44. rpl21 ENSDARG00000010516, ENSDARG00000110263 319.91 2397.88 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
45. rpl18a ENSDARG00000025073 312.13 2339.57 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
46. btf3 ENSDARG00000035400, ENSDARG00000116462 307.60 2305.61 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
47. rpl8 ENSDARG00000014867 296.59 2223.09 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
48. rps26l ENSDARG00000030408 287.53 2155.18 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
49. rps23 ENSDARG00000021838 280.40 2101.73 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
50. apoeb ENSDARG00000040295 279.11 2092.06 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
51. tnnt3a ENSDARG00000030270 271.34 2033.82 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
52. rps14 ENSDARG00000036629 255.15 1912.47 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
53. rpl26 ENSDARG00000102317 254.50 1907.60 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
54. apobb apobb 253.20 1897.86
55. myl1 ENSDARG00000014196 252.56 1893.06 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
56. fabp3 ENSDARG00000023290 250.61 1878.44 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
57. eif5a ENSDARG00000017235 246.73 1849.36 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
58. aldoab ENSDARG00000034470 243.49 1825.08 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
59. rpl36 ENSDARG00000100588 237.66 1781.38 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
60. rpl36a ENSDARG00000058105, ENSDARG00000112656 234.42 1757.09 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
61. hsp90aa1.1 ENSDARG00000010478 231.83 1737.68 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
62. mt-co1 ENSDARG00000063905 229.89 1723.14 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
63. si:dkeyp-86f7.3 si:dkeyp-86f7.3 229.24 1718.26
64. rpl9 ENSDARG00000037350, ENSDARG00000112384 227.95 1708.60 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
65. rpl11 ENSDARG00000043509 226.65 1698.85 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
66. cyt1l ENSDARG00000036832 225.36 1689.18 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
67. rps27a ENSDARG00000032725, ENSDARG00000114059 224.06 1679.44 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
68. rps15 ENSDARG00000070849, ENSDARG00000110979 212.41 1592.12 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
69. tnni2b.1 ENSDARG00000035958 208.52 1562.96 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
70. zgc:92533 zgc:92533 208.52 1562.96
71. rps2 ENSDARG00000077291 207.87 1558.09 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
72. rpl19 ENSDARG00000013307 204.64 1533.88 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
73. myhz2 ENSDARG00000012944 203.34 1524.13 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
74. tnni2a.4 ENSDARG00000029069 202.69 1519.26 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
75. tpm3 ENSDARG00000005162 202.05 1514.46 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
76. AC024175.17 AC024175.17 200.75 1504.72
77. rplp0 ENSDARG00000051783 195.57 1465.89 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
78. pcna ENSDARG00000054155 190.39 1427.07 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
79. rpl6 ENSDARG00000058451 189.74 1422.19 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
80. rpl27 ENSDARG00000015128 189.09 1417.32 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
81. AL954137.2 ENSDARG00000114408 188.45 1412.52
82. ptmab ENSDARG00000101766 181.97 1363.95 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
83. rplp1 ENSDARG00000021864 181.97 1363.95 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
84. pabpc1a ENSDARG00000017219 178.08 1334.80 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
85. ATP5B 176.14 1320.25 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
86. apoa1a ENSDARG00000012076, ENSDARG00000110395 176.14 1320.25 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
87. hsp90ab1 ENSDARG00000029150 175.49 1315.38 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
88. si:dkey-150i13.2 ENSDARG00000071052 175.49 1315.38 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
89. rps6 ENSDARG00000019778 174.20 1305.71 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
90. smyhc1 ENSDARG00000099959, ENSDARG00000115916 173.55 1300.84 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
91. tnnt3b ENSDARG00000068457 170.31 1276.56 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
92. rpl18 ENSDARG00000029533 167.08 1252.35 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
93. atp5g3b 161.90 1213.52 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
94. rpl35 ENSDARG00000018334 161.90 1213.52 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
95. rps15a ENSDARG00000010160 161.25 1208.65 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
96. rpl7 ENSDARG00000007320 160.60 1203.77 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
97. COX5B_1 ENSDARG00000015978 159.95 1198.90 cytochrome c oxidase subunit 5B [Source:HGNC Symbol;Acc:HGNC:2269]
98. rps3 ENSDARG00000103007 159.95 1198.90 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
99. zgc:153129 zgc:153129 159.95 1198.90
100. rps5 ENSDARG00000043453 159.30 1194.03 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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