Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s35.

Sample reads: 133,399. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 21779.13 163268.93
2. krt4 ENSDARG00000017624, ENSDARG00000115790 2589.27 19410.66 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2524.02 18921.51 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. mt-nd2 ENSDARG00000063899 1633.96 12249.11 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
5. ckmb ENSDARG00000040565 1592.19 11935.98 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
6. mt-atp6 ENSDARG00000063911 1375.55 10311.92 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
7. mt-co2 ENSDARG00000063908 1305.08 9783.63 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
8. mt-nd4 ENSDARG00000063917 1229.38 9216.14 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
9. actc1b ENSDARG00000099197 1046.67 7846.44 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
10. tmsb4x ENSDARG00000077777 1038.84 7787.74 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
11. ckma ENSDARG00000035327, ENSDARG00000114671 957.93 7181.20 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
12. atp2a1 ENSDARG00000020574 929.21 6965.89 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
13. mt-nd1 ENSDARG00000063895 785.66 5889.76 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
14. mt-co3 ENSDARG00000063912 764.78 5733.23 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
15. actb2 ENSDARG00000037870 749.11 5615.76 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
16. eef1a1l1 ENSDARG00000020850 725.62 5439.67 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
17. mylz3 ENSDARG00000017441 720.40 5400.53 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
18. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 639.49 4793.99 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
19. apoa1b ENSDARG00000101324 610.78 4578.76 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
20. si:dkey-151g10.6 si:dkey-151g10.6 597.73 4480.93
21. apoc1l apoc1l 584.67 4383.02
22. tnnc2 ENSDARG00000070835, ENSDARG00000111155 574.23 4304.76 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
23. zgc:161979_1 zgc:161979_1 561.18 4206.93
24. acta1a ENSDARG00000036371 542.91 4069.97 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
25. myhz1.3 ENSDARG00000067997 527.25 3952.57 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
26. ppiaa ENSDARG00000009212 524.64 3933.00 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
27. eef2b ENSDARG00000100371, ENSDARG00000109247 503.76 3776.48 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
28. mt-cyb ENSDARG00000063924 501.15 3756.91 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
29. zgc:161979 zgc:161979 469.83 3522.12
30. ttna ttna 462.00 3463.42
31. apoa2 ENSDARG00000015866 456.78 3424.29 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
32. zgc:112425 zgc:112425 456.78 3424.29
33. rpl10a ENSDARG00000042905, ENSDARG00000115649 454.17 3404.72 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
34. apoeb ENSDARG00000040295 451.56 3385.15 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
35. rpl18a ENSDARG00000025073 438.51 3287.32 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
36. hmga1a ENSDARG00000028335 433.29 3248.19 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
37. pvalb2 ENSDARG00000002768, ENSDARG00000114085 425.46 3189.49 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
38. hspa8 ENSDARG00000068992, ENSDARG00000114726 420.23 3150.29 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
39. actb1 ENSDARG00000037746, ENSDARG00000113649 404.57 3032.89 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
40. myl10 ENSDARG00000062592 399.35 2993.76 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
41. rpl23 ENSDARG00000053457 394.13 2954.63 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
42. ttnb ttnb 388.91 2915.49
43. acta1b ENSDARG00000055618 375.86 2817.66 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
44. btf3 ENSDARG00000035400, ENSDARG00000116462 352.37 2641.57 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
45. tnnt3a ENSDARG00000030270 349.76 2622.00 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
46. zgc:66286 zgc:66286 331.49 2485.04
47. rpl36a ENSDARG00000058105, ENSDARG00000112656 328.88 2465.47 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
48. rpl21 ENSDARG00000010516, ENSDARG00000110263 323.66 2426.34 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
49. apobb apobb 300.17 2250.25
50. myl1 ENSDARG00000014196 297.56 2230.68 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
51. rpl9 ENSDARG00000037350, ENSDARG00000112384 294.95 2211.12 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
52. rps14 ENSDARG00000036629 294.95 2211.12 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
53. eif5a ENSDARG00000017235 292.34 2191.55 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
54. rps26l ENSDARG00000030408 289.73 2171.98 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
55. rps23 ENSDARG00000021838 284.51 2132.85 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
56. rps27a ENSDARG00000032725, ENSDARG00000114059 276.68 2074.15 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
57. rpl36 ENSDARG00000100588 274.07 2054.59 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
58. rpl8 ENSDARG00000014867 274.07 2054.59 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
59. aldoab ENSDARG00000034470 268.85 2015.45 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
60. hsp90aa1.1 ENSDARG00000010478 268.85 2015.45 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
61. rpl26 ENSDARG00000102317 268.85 2015.45 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
62. tpm3 ENSDARG00000005162 268.85 2015.45 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
63. zgc:92533 zgc:92533 255.80 1917.62
64. fabp3 ENSDARG00000023290 245.35 1839.29 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
65. rpl11 ENSDARG00000043509 245.35 1839.29 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
66. rplp1 ENSDARG00000021864 237.52 1780.59 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
67. rps2 ENSDARG00000077291 237.52 1780.59 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
68. apoa1a ENSDARG00000012076, ENSDARG00000110395 234.91 1761.02 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
69. lama2 ENSDARG00000099390 234.91 1761.02 laminin, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-060119-1]
70. rps15 ENSDARG00000070849, ENSDARG00000110979 234.91 1761.02 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
71. tnni2a.4 ENSDARG00000029069 234.91 1761.02 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
72. rpl6 ENSDARG00000058451 229.69 1721.89 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
73. tnni2b.1 ENSDARG00000035958 229.69 1721.89 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
74. mt-co1 ENSDARG00000063905 221.86 1663.19 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
75. rpl19 ENSDARG00000013307 221.86 1663.19 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
76. rps5 ENSDARG00000043453 221.86 1663.19 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
77. rpl35 ENSDARG00000018334 219.25 1643.62 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
78. rps3 ENSDARG00000103007 219.25 1643.62 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
79. si:dkey-150i13.2 ENSDARG00000071052 219.25 1643.62 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
80. ptmab ENSDARG00000101766 216.64 1624.06 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
81. AC024175.17 AC024175.17 214.03 1604.49
82. rpl5b ENSDARG00000015862, ENSDARG00000109661 214.03 1604.49 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
83. rps6 ENSDARG00000019778 214.03 1604.49 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
84. rps9 ENSDARG00000011405, ENSDARG00000113248 211.42 1584.93 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
85. smyhc1 ENSDARG00000099959, ENSDARG00000115916 208.81 1565.36 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
86. rpl27 ENSDARG00000015128 206.20 1545.79 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
87. rps20 ENSDARG00000036044 206.20 1545.79 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
88. rpl18 ENSDARG00000029533 203.59 1526.23 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
89. gapdh ENSDARG00000043457 198.37 1487.10 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
90. rps15a ENSDARG00000010160 198.37 1487.10 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
91. pcna ENSDARG00000054155 195.76 1467.53 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
92. myhz2 ENSDARG00000012944 193.15 1447.96 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
93. pabpc1a ENSDARG00000017219 193.15 1447.96 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
94. ATP5B 190.54 1428.40 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
95. id1 ENSDARG00000040764 190.54 1428.40 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
96. desma ENSDARG00000058656 187.93 1408.83 desmin a [Source:ZFIN;Acc:ZDB-GENE-980526-221]
97. hsp90ab1 ENSDARG00000029150 185.32 1389.27 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
98. rbp4 ENSDARG00000101199 185.32 1389.27 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
99. rps4x ENSDARG00000014690 185.32 1389.27 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
100. rpsa ENSDARG00000019181 182.71 1369.70 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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