Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s33.

Sample reads: 133,407. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 25469.55 190917.22
2. krt4 ENSDARG00000017624, ENSDARG00000115790 2794.27 20945.57 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2735.56 20505.49 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. mt-nd2 ENSDARG00000063899 1489.40 11164.39 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
5. ckmb ENSDARG00000040565 1429.49 10715.32 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
6. mt-atp6 ENSDARG00000063911 1418.70 10634.43 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
7. mt-co2 ENSDARG00000063908 1410.32 10571.62 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
8. tmsb4x ENSDARG00000077777 1180.26 8847.11 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
9. mt-nd4 ENSDARG00000063917 1061.63 7957.87 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
10. atp2a1 ENSDARG00000020574 1019.69 7643.49 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
11. mylz3 ENSDARG00000017441 981.35 7356.10 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
12. actc1b ENSDARG00000099197 944.20 7077.63 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
13. ckma ENSDARG00000035327, ENSDARG00000114671 943.01 7068.71 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
14. mt-nd1 ENSDARG00000063895 765.67 5739.39 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
15. si:dkey-151g10.6 si:dkey-151g10.6 736.91 5523.80
16. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 733.32 5496.89 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
17. mt-co3 ENSDARG00000063912 627.87 4706.45 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
18. actb2 ENSDARG00000037870 626.67 4697.46 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
19. apoa1b ENSDARG00000101324 623.08 4670.55 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
20. pvalb2 ENSDARG00000002768, ENSDARG00000114085 595.52 4463.96 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
21. apoc1l apoc1l 585.93 4392.07
22. tnnc2 ENSDARG00000070835, ENSDARG00000111155 578.74 4338.18 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
23. eef1a1l1 ENSDARG00000020850 571.56 4284.36 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
24. mt-cyb ENSDARG00000063924 540.40 4050.78 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
25. ttna ttna 535.61 4014.88
26. zgc:112425 zgc:112425 520.03 3898.09
27. myhz1.3 ENSDARG00000067997 494.87 3709.50 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
28. zgc:161979_1 zgc:161979_1 479.29 3592.71
29. ppiaa ENSDARG00000009212 478.09 3583.72 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
30. ttnb ttnb 470.90 3529.82
31. zgc:161979 zgc:161979 460.12 3449.01
32. acta1a ENSDARG00000036371 456.53 3422.10 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
33. apoa2 ENSDARG00000015866 449.34 3368.21 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
34. rpl10a ENSDARG00000042905, ENSDARG00000115649 445.74 3341.22 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
35. rpl18a ENSDARG00000025073 410.99 3080.74 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
36. eef2b ENSDARG00000100371, ENSDARG00000109247 405.00 3035.84 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
37. hmga1a ENSDARG00000028335 393.02 2946.04 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
38. actb1 ENSDARG00000037746, ENSDARG00000113649 373.85 2802.34 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
39. zgc:66286 zgc:66286 343.89 2577.77
40. apobb apobb 340.30 2550.86
41. rpl8 ENSDARG00000014867 339.10 2541.86 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
42. rpl36 ENSDARG00000100588 334.31 2505.95 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
43. aldoab ENSDARG00000034470 333.11 2496.96 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
44. rpl23 ENSDARG00000053457 327.12 2452.06 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
45. hspa8 ENSDARG00000068992, ENSDARG00000114726 323.52 2425.07 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
46. apoeb ENSDARG00000040295 315.13 2362.18 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
47. acta1b ENSDARG00000055618 310.34 2326.28 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
48. rpl21 ENSDARG00000010516, ENSDARG00000110263 300.76 2254.47 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
49. myl10 ENSDARG00000062592 297.16 2227.48 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
50. tnnt3a ENSDARG00000030270 293.57 2200.57 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
51. rps14 ENSDARG00000036629 291.17 2182.58 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
52. myl1 ENSDARG00000014196 281.58 2110.70 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
53. tnni2a.4 ENSDARG00000029069 276.79 2074.79 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
54. rps23 ENSDARG00000021838 275.59 2065.80 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
55. rps26l ENSDARG00000030408 274.39 2056.80 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
56. si:dkey-150i13.2 ENSDARG00000071052 260.02 1949.08 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
57. btf3 ENSDARG00000035400, ENSDARG00000116462 258.82 1940.09 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
58. rps27a ENSDARG00000032725, ENSDARG00000114059 255.22 1913.10 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
59. mt-co1 ENSDARG00000063905 254.02 1904.11 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
60. lama2 ENSDARG00000099390 248.03 1859.21 laminin, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-060119-1]
61. rpl36a ENSDARG00000058105, ENSDARG00000112656 245.64 1841.29 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
62. fabp3 ENSDARG00000023290 244.44 1832.30 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
63. rpl26 ENSDARG00000102317 240.84 1805.31 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
64. rpl11 ENSDARG00000043509 233.65 1751.42 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
65. AC024175.17 AC024175.17 231.26 1733.50
66. hsp90aa1.1 ENSDARG00000010478 227.66 1706.52 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
67. tnni2b.1 ENSDARG00000035958 226.47 1697.60 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
68. rpl9 ENSDARG00000037350, ENSDARG00000112384 225.27 1688.60 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
69. rps15 ENSDARG00000070849, ENSDARG00000110979 221.67 1661.62 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
70. rpl19 ENSDARG00000013307 220.47 1652.62 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
71. rpl18 ENSDARG00000029533 216.88 1625.71 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
72. eif5a ENSDARG00000017235 214.48 1607.72 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
73. zgc:92533 zgc:92533 214.48 1607.72
74. tnnt3b ENSDARG00000068457 213.28 1598.73 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
75. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 206.10 1544.91 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
76. tpm3 ENSDARG00000005162 206.10 1544.91 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
77. myhz2 ENSDARG00000012944 201.30 1508.92 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
78. rps2 ENSDARG00000077291 201.30 1508.92 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
79. rps9 ENSDARG00000011405, ENSDARG00000113248 195.31 1464.02 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
80. rps20 ENSDARG00000036044 194.11 1455.03 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
81. apoa1a ENSDARG00000012076, ENSDARG00000110395 192.91 1446.03 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
82. rps6 ENSDARG00000019778 192.91 1446.03 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
83. cyt1l ENSDARG00000036832 189.32 1419.12 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
84. rpl6 ENSDARG00000058451 185.73 1392.21 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
85. rps4x ENSDARG00000014690 184.53 1383.22 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
86. rpl27 ENSDARG00000015128 183.33 1374.22 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
87. rps15a ENSDARG00000010160 179.73 1347.24 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
88. rpl5b ENSDARG00000015862, ENSDARG00000109661 176.14 1320.33 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
89. tmem38a ENSDARG00000024047 174.94 1311.33 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
90. desma ENSDARG00000058656 172.54 1293.34 desmin a [Source:ZFIN;Acc:ZDB-GENE-980526-221]
91. rps3 ENSDARG00000103007 172.54 1293.34 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
92. atp5g3b 171.35 1284.42 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
93. rps19 ENSDARG00000030602 171.35 1284.42 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
94. ptmab ENSDARG00000101766 168.95 1266.43 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
95. rpsa ENSDARG00000019181 167.75 1257.44 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
96. si:dkeyp-86f7.3 si:dkeyp-86f7.3 166.55 1248.44
97. rplp0 ENSDARG00000051783 165.36 1239.52 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
98. rps12 ENSDARG00000036875, ENSDARG00000115157 165.36 1239.52 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
99. apoa4 apoa4 164.16 1230.53
100. cirbp cirbp 162.96 1221.53
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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