Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s31.

Sample reads: 133,411. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 24155.34 181063.48
2. krt4 ENSDARG00000017624, ENSDARG00000115790 2876.61 21562.48 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2745.42 20579.11 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. ckmb ENSDARG00000040565 1611.18 12077.08 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. mt-co2 ENSDARG00000063908 1583.84 11872.14 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. mt-nd2 ENSDARG00000063899 1520.98 11400.95 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
7. mt-atp6 ENSDARG00000063911 1329.66 9966.86 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
8. mt-nd4 ENSDARG00000063917 1210.77 9075.68 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
9. tmsb4x ENSDARG00000077777 1157.48 8676.23 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
10. actc1b ENSDARG00000099197 1115.11 8358.64 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
11. ckma ENSDARG00000035327, ENSDARG00000114671 957.96 7180.67 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
12. mylz3 ENSDARG00000017441 937.46 7027.01 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
13. atp2a1 ENSDARG00000020574 912.86 6842.61 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
14. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 813.10 6094.83 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
15. mt-nd1 ENSDARG00000063895 765.27 5736.31 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
16. pvalb2 ENSDARG00000002768, ENSDARG00000114085 677.81 5080.72 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
17. mt-co3 ENSDARG00000063912 669.62 5019.33 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
18. actb2 ENSDARG00000037870 628.62 4712.01 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
19. tnnc2 ENSDARG00000070835, ENSDARG00000111155 614.95 4609.54 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
20. mt-cyb ENSDARG00000063924 588.99 4414.95 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
21. zgc:112425 zgc:112425 584.89 4384.22
22. si:dkey-151g10.6 si:dkey-151g10.6 582.16 4363.75
23. apoa1b ENSDARG00000101324 558.92 4189.55 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
24. eef1a1l1 ENSDARG00000020850 552.09 4138.35 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
25. ttna ttna 530.23 3974.50
26. ppiaa ENSDARG00000009212 490.60 3677.44 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
27. ttnb ttnb 472.83 3544.24
28. apoa2 ENSDARG00000015866 468.73 3513.50 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
29. myhz1.3 ENSDARG00000067997 464.63 3482.77 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
30. apoc1l apoc1l 459.16 3441.77
31. zgc:161979_1 zgc:161979_1 452.33 3390.57
32. acta1b ENSDARG00000055618 437.30 3277.91 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
33. zgc:161979 zgc:161979 429.10 3216.45
34. acta1a ENSDARG00000036371 427.73 3206.18 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
35. rpl10a ENSDARG00000042905, ENSDARG00000115649 425.00 3185.71 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
36. eef2b ENSDARG00000100371, ENSDARG00000109247 420.90 3154.98 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
37. hmga1a ENSDARG00000028335 388.10 2909.12 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
38. rpl36 ENSDARG00000100588 377.17 2827.19 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
39. hspa8 ENSDARG00000068992, ENSDARG00000114726 353.94 2653.06 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
40. actb1 ENSDARG00000037746, ENSDARG00000113649 341.64 2560.86 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
41. tnnt3a ENSDARG00000030270 336.17 2519.86 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
42. rps26l ENSDARG00000030408 329.34 2468.67 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
43. rpl18a ENSDARG00000025073 321.14 2407.20 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
44. rpl21 ENSDARG00000010516, ENSDARG00000110263 319.78 2397.01 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
45. rpl23 ENSDARG00000053457 319.78 2397.01 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
46. myl10 ENSDARG00000062592 318.41 2386.74 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
47. btf3 ENSDARG00000035400, ENSDARG00000116462 306.11 2294.54 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
48. apobb apobb 304.74 2284.27
49. aldoab ENSDARG00000034470 300.64 2253.54 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
50. zgc:66286 zgc:66286 285.61 2140.87
51. rpl8 ENSDARG00000014867 276.05 2069.21 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
52. myl1 ENSDARG00000014196 274.68 2058.94 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
53. rps23 ENSDARG00000021838 270.58 2028.21 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
54. lama2 ENSDARG00000099390 265.11 1987.21 laminin, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-060119-1]
55. apoeb ENSDARG00000040295 256.91 1925.74 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
56. mt-co1 ENSDARG00000063905 256.91 1925.74 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
57. tnnt3b ENSDARG00000068457 252.81 1895.01 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
58. rpl26 ENSDARG00000102317 250.08 1874.55 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
59. tnni2a.4 ENSDARG00000029069 250.08 1874.55 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
60. eif5a ENSDARG00000017235 244.61 1833.55 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
61. hsp90aa1.1 ENSDARG00000010478 237.78 1782.35 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
62. rpl36a ENSDARG00000058105, ENSDARG00000112656 237.78 1782.35 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
63. rpl9 ENSDARG00000037350, ENSDARG00000112384 229.58 1720.88 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
64. rps14 ENSDARG00000036629 228.22 1710.69 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
65. rps15a ENSDARG00000010160 226.85 1700.42 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
66. tnni2b.1 ENSDARG00000035958 224.12 1679.96 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
67. fabp3 ENSDARG00000023290 222.75 1669.69 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
68. rpl11 ENSDARG00000043509 222.75 1669.69 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
69. si:dkey-150i13.2 ENSDARG00000071052 222.75 1669.69 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
70. rps27a ENSDARG00000032725, ENSDARG00000114059 215.92 1618.49 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
71. apoa1a ENSDARG00000012076, ENSDARG00000110395 213.18 1597.95 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
72. rps6 ENSDARG00000019778 210.45 1577.49 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
73. myhz1.1 ENSDARG00000067990, ENSDARG00000102414 209.08 1567.22 myosin, heavy polypeptide 1.1, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-5]
74. rps5 ENSDARG00000043453 209.08 1567.22 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
75. rps15 ENSDARG00000070849, ENSDARG00000110979 203.62 1526.29 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
76. rps20 ENSDARG00000036044 202.25 1516.02 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
77. zgc:92533 zgc:92533 202.25 1516.02
78. tpm3 ENSDARG00000005162 198.15 1485.29 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
79. rpl6 ENSDARG00000058451 194.05 1454.56 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
80. rplp1 ENSDARG00000021864 194.05 1454.56 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
81. rps2 ENSDARG00000077291 192.69 1444.36 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
82. si:dkeyp-86f7.3 si:dkeyp-86f7.3 191.32 1434.10
83. pvalb1 ENSDARG00000037789 187.22 1403.36 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
84. AL954137.2 ENSDARG00000114408 185.85 1393.09
85. ptmab ENSDARG00000101766 185.85 1393.09 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
86. cyt1l ENSDARG00000036832 183.12 1372.63 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
87. AC024175.17 AC024175.17 179.02 1341.90
88. rpl18 ENSDARG00000029533 179.02 1341.90 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
89. rplp0 ENSDARG00000051783 179.02 1341.90 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
90. desma ENSDARG00000058656 177.65 1331.63 desmin a [Source:ZFIN;Acc:ZDB-GENE-980526-221]
91. rps3 ENSDARG00000103007 177.65 1331.63 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
92. rpl35 ENSDARG00000018334 174.92 1311.16 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
93. rpsa ENSDARG00000019181 174.92 1311.16 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
94. pabpc1a ENSDARG00000017219 169.45 1270.16 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
95. cirbp cirbp 163.99 1229.24
96. zgc:153129 zgc:153129 163.99 1229.24
97. COX5B_1 ENSDARG00000015978 162.62 1218.97 cytochrome c oxidase subunit 5B [Source:HGNC Symbol;Acc:HGNC:2269]
98. gapdh ENSDARG00000043457 162.62 1218.97 glyceraldehyde-3-phosphate dehydrogenase [Source:ZFIN;Acc:ZDB-GENE-030115-1]
99. RPL29 ENSDARG00000077717 161.25 1208.70 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
100. rbfox1l ENSDARG00000021184, ENSDARG00000111700 159.89 1198.50 RNA binding fox-1 homolog 1, like [Source:ZFIN;Acc:ZDB-GENE-040923-2]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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