Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s29.

Sample reads: 133,413. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 20772.38 155699.53
2. krt4 ENSDARG00000017624, ENSDARG00000115790 2753.98 20642.48 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 2518.90 18880.43 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. mt-atp6 ENSDARG00000063911 1705.58 12784.19 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
5. mt-nd2 ENSDARG00000063899 1633.51 12243.99 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
6. ckmb ENSDARG00000040565 1609.49 12063.94 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
7. mt-nd4 ENSDARG00000063917 1360.69 10199.06 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
8. mt-co2 ENSDARG00000063908 1338.38 10031.84 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
9. tmsb4x ENSDARG00000077777 1250.87 9375.91 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
10. atp2a1 ENSDARG00000020574 1118.75 8385.60 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
11. actc1b ENSDARG00000099197 1002.07 7511.02 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
12. ckma ENSDARG00000035327, ENSDARG00000114671 974.62 7305.27 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
13. mylz3 ENSDARG00000017441 871.66 6533.53 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
14. mt-co3 ENSDARG00000063912 868.23 6507.82 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
15. mt-nd1 ENSDARG00000063895 845.93 6340.67 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
16. actb2 ENSDARG00000037870 785.87 5890.49 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
17. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 670.91 5028.81 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
18. apoa1b ENSDARG00000101324 658.90 4938.79 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
19. si:dkey-151g10.6 si:dkey-151g10.6 655.46 4913.01
20. eef1a1l1 ENSDARG00000020850 650.32 4874.48 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
21. mt-cyb ENSDARG00000063924 641.74 4810.17 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
22. apoc1l apoc1l 595.41 4462.90
23. myhz1.3 ENSDARG00000067997 559.38 4192.84 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
24. zgc:112425 zgc:112425 554.23 4154.24
25. tnnc2 ENSDARG00000070835, ENSDARG00000111155 490.74 3678.35 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
26. pvalb2 ENSDARG00000002768, ENSDARG00000114085 466.72 3498.30 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
27. eef2b ENSDARG00000100371, ENSDARG00000109247 446.13 3343.97 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
28. hspa8 ENSDARG00000068992, ENSDARG00000114726 446.13 3343.97 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
29. ttna ttna 444.41 3331.08
30. acta1b ENSDARG00000055618 442.70 3318.26 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
31. ppiaa ENSDARG00000009212 432.40 3241.06 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
32. rpl18a ENSDARG00000025073 428.97 3215.35 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
33. apoa2 ENSDARG00000015866 415.24 3112.43 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
34. zgc:161979_1 zgc:161979_1 413.53 3099.62
35. ttnb ttnb 410.09 3073.83
36. rpl10a ENSDARG00000042905, ENSDARG00000115649 399.80 2996.70 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
37. rpl23 ENSDARG00000053457 394.65 2958.10 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
38. hmga1a ENSDARG00000028335 391.22 2932.39 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
39. actb1 ENSDARG00000037746, ENSDARG00000113649 387.79 2906.68 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
40. btf3 ENSDARG00000035400, ENSDARG00000116462 382.64 2868.08 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
41. acta1a ENSDARG00000036371 377.49 2829.48 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
42. apobb apobb 372.34 2790.88
43. myl10 ENSDARG00000062592 363.77 2726.64 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
44. zgc:161979 zgc:161979 358.62 2688.04
45. rpl8 ENSDARG00000014867 341.46 2559.42 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
46. rps26l ENSDARG00000030408 312.29 2340.77 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
47. rpl36 ENSDARG00000100588 301.99 2263.57 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
48. rpl21 ENSDARG00000010516, ENSDARG00000110263 298.56 2237.86 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
49. rpl19 ENSDARG00000013307 295.13 2212.15 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
50. tnnt3a ENSDARG00000030270 295.13 2212.15 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
51. zgc:66286 zgc:66286 293.41 2199.26
52. rpl36a ENSDARG00000058105, ENSDARG00000112656 283.12 2122.13 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
53. rps23 ENSDARG00000021838 283.12 2122.13 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
54. rpl9 ENSDARG00000037350, ENSDARG00000112384 277.97 2083.53 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
55. rpl26 ENSDARG00000102317 267.68 2006.40 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
56. ptmab ENSDARG00000101766 264.24 1980.61 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
57. rps14 ENSDARG00000036629 264.24 1980.61 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
58. zgc:92533 zgc:92533 264.24 1980.61
59. apoeb ENSDARG00000040295 260.81 1954.90 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
60. rpl11 ENSDARG00000043509 260.81 1954.90 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
61. fabp3 ENSDARG00000023290 259.10 1942.09 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
62. myl1 ENSDARG00000014196 259.10 1942.09 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
63. apoa1a ENSDARG00000012076, ENSDARG00000110395 250.52 1877.77 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
64. rps2 ENSDARG00000077291 248.80 1864.88 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
65. eif5a ENSDARG00000017235 247.09 1852.06 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
66. rps15 ENSDARG00000070849, ENSDARG00000110979 245.37 1839.17 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
67. tnnt3b ENSDARG00000068457 236.79 1774.86 troponin T type 3b (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-030520-2]
68. rps27a ENSDARG00000032725, ENSDARG00000114059 235.07 1761.97 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
69. tpm3 ENSDARG00000005162 233.36 1749.15 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
70. cyt1l ENSDARG00000036832 228.21 1710.55 type I cytokeratin, enveloping layer, like [Source:ZFIN;Acc:ZDB-GENE-061026-4]
71. rplp0 ENSDARG00000051783 226.50 1697.73 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
72. tnni2a.4 ENSDARG00000029069 221.35 1659.13 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
73. tnni2b.1 ENSDARG00000035958 212.77 1594.82 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
74. aldoab ENSDARG00000034470 204.19 1530.51 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
75. rps9 ENSDARG00000011405, ENSDARG00000113248 204.19 1530.51 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
76. hsp90aa1.1 ENSDARG00000010478 200.76 1504.80 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
77. rps3 ENSDARG00000103007 200.76 1504.80 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
78. rpl18 ENSDARG00000029533 197.33 1479.09 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
79. lama2 ENSDARG00000099390 195.61 1466.20 laminin, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-060119-1]
80. mt-co1 ENSDARG00000063905 195.61 1466.20 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
81. pabpc1a ENSDARG00000017219 193.89 1453.30 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
82. rpl27 ENSDARG00000015128 190.46 1427.59 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
83. pvalb1 ENSDARG00000037789 188.75 1414.78 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
84. rps27.1 ENSDARG00000023298 185.31 1388.99 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
85. faua ENSDARG00000099022 183.60 1376.18 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
86. rps15a ENSDARG00000010160 183.60 1376.18 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
87. rpl15 ENSDARG00000009285 181.88 1363.28 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
88. si:dkeyp-86f7.3 si:dkeyp-86f7.3 178.45 1337.57
89. RPL29 ENSDARG00000077717 175.02 1311.86 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
90. hsp90ab1 ENSDARG00000029150 175.02 1311.86 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
91. id1 ENSDARG00000040764 175.02 1311.86 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
92. rplp1 ENSDARG00000021864 171.59 1286.15 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
93. rps5 ENSDARG00000043453 171.59 1286.15 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
94. rps19 ENSDARG00000030602 168.16 1260.44 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
95. rps6 ENSDARG00000019778 168.16 1260.44 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
96. ATP5B 166.44 1247.55 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
97. smyhc1 ENSDARG00000099959, ENSDARG00000115916 166.44 1247.55 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
98. tmem38a ENSDARG00000024047 166.44 1247.55 transmembrane protein 38A [Source:ZFIN;Acc:ZDB-GENE-040426-1888]
99. cirbp cirbp 164.72 1234.66
100. desma ENSDARG00000058656 164.72 1234.66 desmin a [Source:ZFIN;Acc:ZDB-GENE-980526-221]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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