Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s19.

Sample reads: 133,396. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 35112.20 263224.40
2. krt4 ENSDARG00000017624, ENSDARG00000115790 1927.05 14446.45 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 1229.76 9219.10 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. apoa1b ENSDARG00000101324 1028.18 7707.92 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
5. zgc:112425 zgc:112425 993.32 7446.59
6. mt-co2 ENSDARG00000063908 844.35 6329.81 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. mt-nd2 ENSDARG00000063899 825.97 6192.02 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
8. apoc1l apoc1l 753.70 5650.24
9. mt-atp6 ENSDARG00000063911 716.30 5369.86 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
10. mt-nd4 ENSDARG00000063917 682.07 5113.25 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
11. zgc:161979_1 zgc:161979_1 631.36 4733.09
12. actb2 ENSDARG00000037870 622.49 4666.60 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
13. hmga1a ENSDARG00000028335 589.52 4419.43 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
14. zgc:161979 zgc:161979 582.55 4367.18
15. apoa2 ENSDARG00000015866 572.41 4291.17 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
16. apobb apobb 557.20 4177.14
17. eef1a1l1 ENSDARG00000020850 557.20 4177.14 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
18. tpma ENSDARG00000033683 545.15 4086.81 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
19. si:dkey-151g10.6 si:dkey-151g10.6 536.91 4025.03
20. mt-co3 ENSDARG00000063912 453.87 3402.51 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
21. ppiaa ENSDARG00000009212 432.32 3240.96 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
22. eef2b ENSDARG00000100371, ENSDARG00000109247 429.15 3217.19 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
23. AL954137.2 ENSDARG00000114408 403.79 3027.08
24. mt-nd1 ENSDARG00000063895 384.14 2879.77 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
25. ptmab ENSDARG00000101766 377.80 2832.24 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
26. apoa1a ENSDARG00000012076, ENSDARG00000110395 368.93 2765.74 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
27. AC024175.17 AC024175.17 355.62 2665.96
28. ckmb ENSDARG00000040565 349.91 2623.16 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
29. hspa8 ENSDARG00000068992, ENSDARG00000114726 346.74 2599.39 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
30. si:dkey-150i13.2 ENSDARG00000071052 342.94 2570.91 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
31. he1a 335.33 2513.86 hatching enzyme 1a, transcript variant X1
32. apoeb ENSDARG00000040295 334.70 2509.13 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
33. mt-cyb ENSDARG00000063924 334.06 2504.34 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
34. actb1 ENSDARG00000037746, ENSDARG00000113649 301.74 2262.04 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
35. rpl18a ENSDARG00000025073 301.10 2257.25 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
36. hbbe3 ENSDARG00000038147, ENSDARG00000109344 299.83 2247.73 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
37. rpl10a ENSDARG00000042905, ENSDARG00000115649 296.03 2219.24 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
38. ctslb ENSDARG00000039173, ENSDARG00000074306 284.62 2133.70 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
39. hsp90ab1 ENSDARG00000029150 277.65 2081.45 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
40. pcna ENSDARG00000054155 277.01 2076.65 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
41. zgc:174855 ENSDARG00000094559 267.50 2005.36 zgc:174855 [Source:ZFIN;Acc:ZDB-GENE-071004-74]
42. si:dkeyp-86f7.3 si:dkeyp-86f7.3 258.00 1934.14
43. rpl23 ENSDARG00000053457 254.83 1910.38 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
44. rpl36 ENSDARG00000100588 254.19 1905.58 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
45. rps23 ENSDARG00000021838 247.22 1853.33 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
46. rpl8 ENSDARG00000014867 246.59 1848.60 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
47. rps26l ENSDARG00000030408 240.25 1801.07 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
48. pabpc1a ENSDARG00000017219 238.98 1791.55 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
49. actc1b ENSDARG00000099197 234.54 1758.27 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
50. atp2a1 ENSDARG00000020574 233.91 1753.54 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
51. hbae3 ENSDARG00000079305 233.91 1753.54 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
52. rplp1 ENSDARG00000021864 219.96 1648.97 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
53. rps14 ENSDARG00000036629 212.99 1596.71 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
54. CABZ01044814.2 CABZ01044814.2 212.36 1591.99
55. fabp3 ENSDARG00000023290 209.82 1572.95 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
56. mylz3 ENSDARG00000017441 208.55 1563.43 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
57. bhmt ENSDARG00000013430 207.92 1558.71 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
58. ckma ENSDARG00000035327, ENSDARG00000114671 207.28 1553.91 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
59. eif5a ENSDARG00000017235 206.65 1549.19 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
60. ttnb ttnb 206.65 1549.19
61. wu:fa26c03 206.65 1549.19 wu:fa26c03
62. btf3 ENSDARG00000035400, ENSDARG00000116462 205.38 1539.67 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
63. rpl26 ENSDARG00000102317 200.95 1506.45 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
64. rpl11 ENSDARG00000043509 199.68 1496.93 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
65. pvalb2 ENSDARG00000002768, ENSDARG00000114085 197.14 1477.89 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
66. rpl21 ENSDARG00000010516, ENSDARG00000110263 195.87 1468.37 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
67. rps27a ENSDARG00000032725, ENSDARG00000114059 192.07 1439.88 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
68. khdrbs1a ENSDARG00000052856 190.17 1425.64 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
69. ttna ttna 188.90 1416.12
70. wu:fb37b09 wu:fb37b09 187.00 1401.88
71. apoa4 apoa4 186.37 1397.15
72. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 184.46 1382.83 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
73. rps15 ENSDARG00000070849, ENSDARG00000110979 184.46 1382.83 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
74. rpl9 ENSDARG00000037350, ENSDARG00000112384 183.20 1373.39 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
75. rps2 ENSDARG00000077291 181.93 1363.87 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
76. rpl36a ENSDARG00000058105, ENSDARG00000112656 180.03 1349.62 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
77. fetub ENSDARG00000053973 174.32 1306.82 fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
78. id1 ENSDARG00000040764 169.88 1273.53 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
79. lama2 ENSDARG00000099390 169.88 1273.53 laminin, alpha 2 [Source:ZFIN;Acc:ZDB-GENE-060119-1]
80. si:ch1073-429i10.3 167.35 1254.57 si:ch1073-429i10.3, transcript variant X2
81. rpsa ENSDARG00000019181 164.18 1230.80 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
82. top1l ENSDARG00000070545 162.28 1216.56 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
83. cirbp cirbp 161.64 1211.76
84. he1b 159.74 1197.52 hatching enzyme 1b
85. rps3 ENSDARG00000103007 159.11 1192.79 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
86. rps6 ENSDARG00000019778 158.47 1188.00 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
87. zgc:123194 zgc:123194 156.57 1173.75
88. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 155.94 1169.03 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
89. ran ENSDARG00000057026 155.94 1169.03 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
90. rpl35 ENSDARG00000018334 155.94 1169.03 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
91. rpl6 ENSDARG00000058451 155.94 1169.03 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
92. cfl1 ENSDARG00000021124 155.30 1164.23 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
93. fabp2 ENSDARG00000006427, ENSDARG00000110230 152.14 1140.54 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
94. pnrc2 ENSDARG00000053291, ENSDARG00000112537 148.97 1116.78 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
95. rps27.1 ENSDARG00000023298 148.33 1111.98 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
96. zgc:153129 zgc:153129 147.70 1107.26
97. tnnc2 ENSDARG00000070835, ENSDARG00000111155 145.80 1093.01 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
98. rpl27 ENSDARG00000015128 145.16 1088.22 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
99. tfa ENSDARG00000016771 144.53 1083.49 transferrin-a [Source:ZFIN;Acc:ZDB-GENE-980526-35]
100. rpl19 ENSDARG00000013307 141.99 1064.45 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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