Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s18.

Sample reads: 133,413. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 17143.99 128504.91
2. krt4 ENSDARG00000017624, ENSDARG00000115790 2207.73 16548.31 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tmsb4x ENSDARG00000077777 1632.57 12237.13 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
4. zgc:112425 zgc:112425 1500.17 11244.71
5. mt-co2 ENSDARG00000063908 1321.51 9905.54 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. mt-nd2 ENSDARG00000063899 1035.00 7757.97 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
7. mt-atp6 ENSDARG00000063911 1033.57 7747.25 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
8. mt-nd4 ENSDARG00000063917 964.53 7229.75 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
9. apoa1b ENSDARG00000101324 892.27 6688.12 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
10. hmga1a ENSDARG00000028335 854.55 6405.39 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
11. apoa2 ENSDARG00000015866 775.89 5815.78 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
12. actb2 ENSDARG00000037870 715.39 5362.29 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
13. si:dkey-151g10.6 si:dkey-151g10.6 687.27 5151.52
14. zgc:161979 zgc:161979 675.52 5063.44
15. mt-co3 ENSDARG00000063912 659.15 4940.74 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
16. eef1a1l1 ENSDARG00000020850 650.61 4876.73 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
17. ppiaa ENSDARG00000009212 623.56 4673.97 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
18. pcna ENSDARG00000054155 589.39 4417.85 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
19. tpma ENSDARG00000033683 580.14 4348.51 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
20. zgc:161979_1 zgc:161979_1 560.21 4199.12
21. ptmab ENSDARG00000101766 548.11 4108.43 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
22. eef2b ENSDARG00000100371, ENSDARG00000109247 541.70 4060.38 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
23. apobb apobb 537.43 4028.37
24. mt-nd1 ENSDARG00000063895 533.16 3996.37 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
25. apoc1l apoc1l 519.99 3897.65
26. AL954137.2 ENSDARG00000114408 473.72 3550.83
27. hbbe3 ENSDARG00000038147, ENSDARG00000109344 432.08 3238.71 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
28. rpl10a ENSDARG00000042905, ENSDARG00000115649 426.74 3198.68 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
29. hspa8 ENSDARG00000068992, ENSDARG00000114726 414.99 3110.61 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
30. mt-cyb ENSDARG00000063924 412.86 3094.64 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
31. rpl18a ENSDARG00000025073 407.88 3057.32 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
32. hsp90ab1 ENSDARG00000029150 406.45 3046.60 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
33. ckmb ENSDARG00000040565 391.86 2937.24 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
34. apoa1a ENSDARG00000012076, ENSDARG00000110395 364.81 2734.48 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
35. rpl23 ENSDARG00000053457 348.80 2614.47 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
36. rps23 ENSDARG00000021838 341.32 2558.41 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
37. hbae3 ENSDARG00000079305 335.27 2513.06 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
38. rpl21 ENSDARG00000010516, ENSDARG00000110263 327.80 2457.07 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
39. rpl36 ENSDARG00000100588 326.37 2446.35 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
40. rps26l ENSDARG00000030408 326.37 2446.35 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
41. apoeb ENSDARG00000040295 314.98 2360.97 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
42. btf3 ENSDARG00000035400, ENSDARG00000116462 310.71 2328.97 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
43. actb1 ENSDARG00000037746, ENSDARG00000113649 292.56 2192.92 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
44. rpl8 ENSDARG00000014867 291.85 2187.60 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
45. cirbp cirbp 286.15 2144.87
46. bhmt ENSDARG00000013430 272.27 2040.83 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
47. rps27a ENSDARG00000032725, ENSDARG00000114059 272.27 2040.83 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
48. rpl26 ENSDARG00000102317 264.09 1979.52 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
49. eif5a ENSDARG00000017235 261.24 1958.16 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
50. rpl9 ENSDARG00000037350, ENSDARG00000112384 260.17 1950.14 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
51. rpl19 ENSDARG00000013307 256.26 1920.83 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
52. si:dkeyp-86f7.3 si:dkeyp-86f7.3 254.12 1904.79
53. rps15 ENSDARG00000070849, ENSDARG00000110979 251.99 1888.82 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
54. wu:fa26c03 250.92 1880.80 wu:fa26c03
55. h3f3a 248.07 1859.44 H3 histone, family 3A, transcript variant X1
56. rpl6 ENSDARG00000058451 247.00 1851.42 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
57. rps14 ENSDARG00000036629 244.87 1835.45 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
58. he1a 243.80 1827.43 hatching enzyme 1a, transcript variant X1
59. ckma ENSDARG00000035327, ENSDARG00000114671 243.44 1824.73 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
60. rpl35 ENSDARG00000018334 241.67 1811.47 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
61. zgc:123194 zgc:123194 239.17 1792.73
62. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 238.82 1790.10 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
63. rps20 ENSDARG00000036044 237.75 1782.08 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
64. atp2a1 ENSDARG00000020574 232.77 1744.76 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
65. ctslb ENSDARG00000039173, ENSDARG00000074306 230.63 1728.72 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
66. rpl36a ENSDARG00000058105, ENSDARG00000112656 230.28 1726.09 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
67. rps2 ENSDARG00000077291 229.92 1723.39 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
68. rpl39 ENSDARG00000036316, ENSDARG00000117167 226.00 1694.01 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
69. pvalb2 ENSDARG00000002768, ENSDARG00000114085 223.51 1675.35 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
70. rplp1 ENSDARG00000021864 222.45 1667.40 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
71. cfl1 ENSDARG00000021124 220.67 1654.06 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
72. zgc:174855 ENSDARG00000094559 220.67 1654.06 zgc:174855 [Source:ZFIN;Acc:ZDB-GENE-071004-74]
73. mylz3 ENSDARG00000017441 214.26 1606.01 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
74. hnrnpab hnrnpab 213.55 1600.69
75. id1 ENSDARG00000040764 211.77 1587.35 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
76. ran ENSDARG00000057026 210.70 1579.33 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
77. hmgn2 ENSDARG00000099572 208.21 1560.66 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
78. mt-co1 ENSDARG00000063905 208.21 1560.66 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
79. actc1b ENSDARG00000099197 207.85 1557.97 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
80. pabpc1a ENSDARG00000017219 203.58 1525.96 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
81. rpl27 ENSDARG00000015128 203.58 1525.96 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
82. rps15a ENSDARG00000010160 202.87 1520.64 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
83. faua ENSDARG00000099022 200.74 1504.67 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
84. h3f3d ENSDARG00000045248 198.96 1491.33 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
85. seta ENSDARG00000031495 195.75 1467.27 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
86. rpl11 ENSDARG00000043509 195.40 1464.64 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
87. RPL29 ENSDARG00000077717 195.04 1461.95 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
88. fabp3 ENSDARG00000023290 195.04 1461.95 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
89. rps6 ENSDARG00000019778 195.04 1461.95 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
90. rps3 ENSDARG00000103007 193.62 1451.30 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
91. hbbe1.1 ENSDARG00000113599 189.35 1419.30 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
92. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 188.28 1411.28 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
93. khdrbs1a ENSDARG00000052856 186.14 1395.24 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
94. si:ch1073-429i10.3 184.36 1381.89 si:ch1073-429i10.3, transcript variant X2
95. rpsa ENSDARG00000019181 184.01 1379.27 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
96. rps5 ENSDARG00000043453 180.45 1352.59 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
97. hnrnpa0a ENSDARG00000089302 180.09 1349.89 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
98. rps4x ENSDARG00000014690 180.09 1349.89 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
99. ppiab ENSDARG00000103994 177.60 1331.22 peptidylprolyl isomerase Ab (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-7459]
100. rps27.1 ENSDARG00000023298 176.53 1323.20 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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