Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s15.

Sample reads: 133,413. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 24734.90 185402.64
2. zgc:112425 zgc:112425 1694.23 12699.25
3. krt4 ENSDARG00000017624, ENSDARG00000115790 1391.16 10427.56 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. mt-co2 ENSDARG00000063908 1134.16 8501.20 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
5. mt-nd2 ENSDARG00000063899 1033.94 7749.99 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
6. mt-nd4 ENSDARG00000063917 923.22 6920.08 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
7. tmsb4x ENSDARG00000077777 915.68 6863.56 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
8. mt-atp6 ENSDARG00000063911 893.86 6700.01 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
9. hmga1a ENSDARG00000028335 815.19 6110.33 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
10. actb2 ENSDARG00000037870 728.99 5464.21 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
11. ppiaa ENSDARG00000009212 720.37 5399.60 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
12. pcna ENSDARG00000054155 719.29 5391.50 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
13. eef1a1l1 ENSDARG00000020850 685.88 5141.07 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
14. si:dkey-151g10.6 si:dkey-151g10.6 676.72 5072.41
15. ptmab ENSDARG00000101766 551.99 4137.49 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
16. eef2b ENSDARG00000100371, ENSDARG00000109247 547.95 4107.21 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
17. mt-nd1 ENSDARG00000063895 533.94 4002.19 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
18. mt-co3 ENSDARG00000063912 513.20 3846.74 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
19. apoa1b ENSDARG00000101324 512.12 3838.64 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
20. hspa8 ENSDARG00000068992, ENSDARG00000114726 507.00 3800.26 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
21. AL954137.2 ENSDARG00000114408 503.77 3776.05
22. rpl10a ENSDARG00000042905, ENSDARG00000115649 446.12 3343.93 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
23. hsp90ab1 ENSDARG00000029150 432.38 3240.94 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
24. mt-cyb ENSDARG00000063924 430.50 3226.85 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
25. rpl18a ENSDARG00000025073 393.86 2952.21 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
26. apoa2 ENSDARG00000015866 362.61 2717.98 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
27. zgc:161979 zgc:161979 360.72 2703.81
28. tpma ENSDARG00000033683 359.37 2693.69 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
29. apoc1l apoc1l 347.79 2606.89
30. pabpc1a ENSDARG00000017219 346.71 2598.80 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
31. zgc:123194 zgc:123194 343.21 2572.56
32. rpl21 ENSDARG00000010516, ENSDARG00000110263 339.98 2548.35 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
33. zgc:161979_1 zgc:161979_1 337.01 2526.09
34. btf3 ENSDARG00000035400, ENSDARG00000116462 333.78 2501.88 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
35. rpl8 ENSDARG00000014867 332.17 2489.81 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
36. rps26l ENSDARG00000030408 330.82 2479.69 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
37. rps14 ENSDARG00000036629 327.59 2455.48 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
38. rps23 ENSDARG00000021838 326.51 2447.38 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
39. apobb apobb 308.46 2312.09
40. rpl36a ENSDARG00000058105, ENSDARG00000112656 307.38 2303.99 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
41. rplp1 ENSDARG00000021864 300.65 2253.55 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
42. rpl26 ENSDARG00000102317 286.10 2144.49 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
43. id1 ENSDARG00000040764 285.02 2136.39 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
44. rpl11 ENSDARG00000043509 282.87 2120.28 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
45. rpl36 ENSDARG00000100588 281.25 2108.13 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
46. rpl9 ENSDARG00000037350, ENSDARG00000112384 280.71 2104.09 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
47. eif5a ENSDARG00000017235 279.09 2091.94 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
48. si:dkeyp-86f7.3 si:dkeyp-86f7.3 276.94 2075.83
49. cirbp cirbp 274.51 2057.61
50. ran ENSDARG00000057026 272.90 2045.55 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
51. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 270.20 2025.31 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
52. actb1 ENSDARG00000037746, ENSDARG00000113649 264.82 1984.98 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
53. rps27a ENSDARG00000032725, ENSDARG00000114059 256.47 1922.39 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
54. cfl1 ENSDARG00000021124 254.31 1906.20 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
55. h3f3a 236.80 1774.96 H3 histone, family 3A, transcript variant X1
56. rps2 ENSDARG00000077291 235.99 1768.88 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
57. rpl19 ENSDARG00000013307 235.45 1764.84 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
58. rps15 ENSDARG00000070849, ENSDARG00000110979 234.37 1756.74 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
59. rpl6 ENSDARG00000058451 229.53 1720.46 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
60. mt-co1 ENSDARG00000063905 226.02 1694.15 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
61. rps3 ENSDARG00000103007 225.48 1690.11 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
62. hmgn2 ENSDARG00000099572 223.87 1678.04 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
63. seta ENSDARG00000031495 219.83 1647.76 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
64. ccnd1 ENSDARG00000101637 218.21 1635.61 cyclin D1 [Source:ZFIN;Acc:ZDB-GENE-980526-176]
65. rps15a ENSDARG00000010160 214.17 1605.33 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
66. khdrbs1a ENSDARG00000052856 209.59 1571.00 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
67. ckmb ENSDARG00000040565 207.44 1554.88 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
68. fabp3 ENSDARG00000023290 206.09 1544.77 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
69. top1l ENSDARG00000070545 205.28 1538.69 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
70. rps20 ENSDARG00000036044 202.86 1520.56 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
71. rpl23 ENSDARG00000053457 198.81 1490.20 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
72. rpl27 ENSDARG00000015128 196.93 1476.11 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
73. rpsa ENSDARG00000019181 195.85 1468.01 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
74. apoa1a ENSDARG00000012076, ENSDARG00000110395 195.58 1465.99 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
75. rpl35 ENSDARG00000018334 193.70 1451.90 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
76. rps6 ENSDARG00000019778 193.43 1449.87 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
77. si:ch1073-429i10.3 190.46 1427.61 si:ch1073-429i10.3, transcript variant X2
78. he1a 188.31 1411.49 hatching enzyme 1a, transcript variant X1
79. rpl18 ENSDARG00000029533 185.34 1389.23 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
80. eif5a2 ENSDARG00000056186 184.00 1379.19 eukaryotic translation initiation factor 5A2 [Source:ZFIN;Acc:ZDB-GENE-040426-2405]
81. hnrnpab hnrnpab 183.73 1377.16
82. atp2a1 ENSDARG00000020574 180.76 1354.90 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
83. faua ENSDARG00000099022 178.88 1340.81 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
84. rps27.1 ENSDARG00000023298 176.72 1324.62 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
85. ppiab ENSDARG00000103994 171.07 1282.27 peptidylprolyl isomerase Ab (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-7459]
86. rps9 ENSDARG00000011405, ENSDARG00000113248 170.80 1280.25 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
87. rps4x ENSDARG00000014690 168.64 1264.06 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
88. rpl15 ENSDARG00000009285 167.30 1254.01 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
89. rpl5b ENSDARG00000015862, ENSDARG00000109661 167.30 1254.01 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
90. rpl7 ENSDARG00000007320 166.22 1245.92 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
91. rpl39 ENSDARG00000036316, ENSDARG00000117167 165.68 1241.87 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
92. ddx5 ENSDARG00000038068 163.79 1227.70 DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-925]
93. rpl24 ENSDARG00000099104 162.18 1215.63 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
94. rps12 ENSDARG00000036875, ENSDARG00000115157 161.91 1213.61 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
95. RPL29 ENSDARG00000077717 161.37 1209.56 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
96. rplp0 ENSDARG00000051783 160.29 1201.47 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
97. rps5 ENSDARG00000043453 156.52 1173.21 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
98. ctslb ENSDARG00000039173, ENSDARG00000074306 155.44 1165.11 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
99. rps13 ENSDARG00000036298, ENSDARG00000112818 152.48 1142.93 ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]
100. h3f3d ENSDARG00000045248 150.32 1126.74 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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