Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s14.

Sample reads: 133,390. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 22299.61 167178.61
2. zgc:112425 zgc:112425 1828.58 13708.74
3. krt4 ENSDARG00000017624, ENSDARG00000115790 1360.58 10200.17 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. mt-co2 ENSDARG00000063908 1282.33 9613.54 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
5. mt-nd2 ENSDARG00000063899 1114.21 8353.15 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
6. mt-atp6 ENSDARG00000063911 1010.72 7577.30 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
7. hmga1a ENSDARG00000028335 998.60 7486.43 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
8. tmsb4x ENSDARG00000077777 937.76 7030.32 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
9. pcna ENSDARG00000054155 854.72 6407.78 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
10. mt-nd4 ENSDARG00000063917 804.74 6033.08 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
11. ppiaa ENSDARG00000009212 752.23 5639.42 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
12. actb2 ENSDARG00000037870 720.93 5404.76 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
13. si:dkey-151g10.6 si:dkey-151g10.6 658.08 4933.58
14. eef1a1l1 ENSDARG00000020850 655.55 4914.61 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
15. mt-co3 ENSDARG00000063912 588.91 4415.02 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
16. AL954137.2 ENSDARG00000114408 551.80 4136.81
17. mt-nd1 ENSDARG00000063895 533.12 3996.76 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
18. ptmab ENSDARG00000101766 524.29 3930.57 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
19. eef2b ENSDARG00000100371, ENSDARG00000109247 499.30 3743.22 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
20. rpl10a ENSDARG00000042905, ENSDARG00000115649 488.19 3659.93 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
21. hspa8 ENSDARG00000068992, ENSDARG00000114726 475.32 3563.44 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
22. hsp90ab1 ENSDARG00000029150 455.13 3412.08 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
23. mt-cyb ENSDARG00000063924 420.29 3150.88 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
24. apoa1b ENSDARG00000101324 419.03 3141.44 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
25. rpl18a ENSDARG00000025073 406.91 3050.58 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
26. rpl23 ENSDARG00000053457 395.05 2961.66 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
27. rpl8 ENSDARG00000014867 364.50 2732.63 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
28. rps23 ENSDARG00000021838 362.23 2715.61 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
29. id1 ENSDARG00000040764 345.32 2588.84 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
30. btf3 ENSDARG00000035400, ENSDARG00000116462 342.54 2568.00 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
31. rpl21 ENSDARG00000010516, ENSDARG00000110263 340.02 2549.11 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
32. rps26l ENSDARG00000030408 334.21 2505.55 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
33. rpl26 ENSDARG00000102317 326.39 2446.92 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
34. rps14 ENSDARG00000036629 314.27 2356.06 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
35. apoa2 ENSDARG00000015866 311.75 2337.17 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
36. ran ENSDARG00000057026 308.21 2310.63 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
37. rps27a ENSDARG00000032725, ENSDARG00000114059 294.83 2210.32 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
38. tpma ENSDARG00000033683 292.81 2195.18 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
39. si:dkeyp-86f7.3 si:dkeyp-86f7.3 292.31 2191.43
40. zgc:161979 zgc:161979 291.81 2187.68
41. rpl36 ENSDARG00000100588 291.05 2181.98 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
42. zgc:123194 zgc:123194 290.80 2180.11
43. rpl9 ENSDARG00000037350, ENSDARG00000112384 290.54 2178.16 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
44. pabpc1a ENSDARG00000017219 287.01 2151.69 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
45. rpl36a ENSDARG00000058105, ENSDARG00000112656 282.21 2115.71 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
46. cirbp cirbp 276.15 2070.28
47. rplp1 ENSDARG00000021864 276.15 2070.28 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
48. actb1 ENSDARG00000037746, ENSDARG00000113649 273.13 2047.64 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
49. apoc1l apoc1l 269.34 2019.22
50. eif5a ENSDARG00000017235 266.56 1998.38 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
51. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 266.56 1998.38 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
52. rps15 ENSDARG00000070849, ENSDARG00000110979 261.26 1958.65 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
53. rpl11 ENSDARG00000043509 256.97 1926.49 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
54. apobb apobb 256.72 1924.61
55. h3f3a 254.45 1907.59 H3 histone, family 3A, transcript variant X1
56. fabp3 ENSDARG00000023290 252.43 1892.45 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
57. cfl1 ENSDARG00000021124 244.85 1835.62 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
58. rpl19 ENSDARG00000013307 240.56 1803.46 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
59. khdrbs1a ENSDARG00000052856 230.97 1731.57 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
60. zgc:161979_1 zgc:161979_1 229.96 1723.99
61. rps6 ENSDARG00000019778 229.46 1720.25 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
62. hmgn2 ENSDARG00000099572 227.18 1703.15 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
63. rpl6 ENSDARG00000058451 224.66 1684.26 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
64. rps20 ENSDARG00000036044 222.89 1670.99 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
65. rps15a ENSDARG00000010160 222.39 1667.24 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
66. rps2 ENSDARG00000077291 219.11 1642.65 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
67. rpl27 ENSDARG00000015128 217.09 1627.51 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
68. top1l ENSDARG00000070545 216.83 1625.56 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
69. rpl18 ENSDARG00000029533 216.08 1619.94 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
70. ccnd1 ENSDARG00000101637 212.29 1591.52 cyclin D1 [Source:ZFIN;Acc:ZDB-GENE-980526-176]
71. he1a 210.02 1574.51 hatching enzyme 1a, transcript variant X1
72. ckmb ENSDARG00000040565 209.77 1572.63 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
73. seta ENSDARG00000031495 205.73 1542.34 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
74. rpl35 ENSDARG00000018334 197.15 1478.02 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
75. hnrnpab hnrnpab 196.89 1476.07
76. rps4x ENSDARG00000014690 195.38 1464.75 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
77. rpsa ENSDARG00000019181 194.62 1459.05 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
78. rps19 ENSDARG00000030602 192.35 1442.03 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
79. si:ch1073-429i10.3 191.84 1438.21 si:ch1073-429i10.3, transcript variant X2
80. apoa1a ENSDARG00000012076, ENSDARG00000110395 189.57 1421.19 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
81. rps3 ENSDARG00000103007 189.32 1419.32 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
82. rpl7 ENSDARG00000007320 182.76 1370.14 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
83. rplp0 ENSDARG00000051783 182.50 1368.19 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
84. faua ENSDARG00000099022 180.99 1356.87 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
85. ppiab ENSDARG00000103994 180.99 1356.87 peptidylprolyl isomerase Ab (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-7459]
86. rps27.1 ENSDARG00000023298 180.99 1356.87 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
87. RPL29 ENSDARG00000077717 180.48 1353.05 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
88. ctslb ENSDARG00000039173, ENSDARG00000074306 177.96 1334.15 cathepsin Lb [Source:ZFIN;Acc:ZDB-GENE-980526-285]
89. ddx5 ENSDARG00000038068 177.71 1332.28 DEAD (Asp-Glu-Ala-Asp) box helicase 5 [Source:ZFIN;Acc:ZDB-GENE-030131-925]
90. rps5 ENSDARG00000043453 175.18 1313.31 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
91. rpl39 ENSDARG00000036316, ENSDARG00000117167 173.42 1300.12 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
92. rpl5b ENSDARG00000015862, ENSDARG00000109661 173.16 1298.17 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
93. rpl31 ENSDARG00000053365 170.39 1277.40 ribosomal protein L31 [Source:ZFIN;Acc:ZDB-GENE-060331-121]
94. rps9 ENSDARG00000011405, ENSDARG00000113248 169.13 1267.96 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
95. hbbe3 ENSDARG00000038147, ENSDARG00000109344 168.12 1260.38 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
96. npm1a ENSDARG00000014329, ENSDARG00000113199 167.86 1258.43 nucleophosmin 1a [Source:ZFIN;Acc:ZDB-GENE-021028-1]
97. h3f3d ENSDARG00000045248 165.59 1241.42 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
98. eif5a2 ENSDARG00000056186 165.09 1237.67 eukaryotic translation initiation factor 5A2 [Source:ZFIN;Acc:ZDB-GENE-040426-2405]
99. hbae3 ENSDARG00000079305 160.04 1199.81 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
100. rps12 ENSDARG00000036875, ENSDARG00000115157 158.02 1184.66 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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