Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s13.

Sample reads: 133,418. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 26064.55 195361.83
2. zgc:112425 zgc:112425 1528.81 11458.90
3. krt4 ENSDARG00000017624, ENSDARG00000115790 1462.22 10959.79 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. mt-co2 ENSDARG00000063908 1131.15 8478.32 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
5. tmsb4x ENSDARG00000077777 1122.13 8410.71 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
6. mt-nd2 ENSDARG00000063899 979.94 7344.95 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
7. mt-nd4 ENSDARG00000063917 914.69 6855.88 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
8. hmga1a ENSDARG00000028335 914.15 6851.84 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
9. mt-atp6 ENSDARG00000063911 852.08 6386.60 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
10. actb2 ENSDARG00000037870 845.45 6336.91 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
11. si:dkey-151g10.6 si:dkey-151g10.6 697.69 5229.40
12. ppiaa ENSDARG00000009212 658.96 4939.11 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
13. eef1a1l1 ENSDARG00000020850 606.43 4545.38 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
14. pcna ENSDARG00000054155 579.37 4342.56 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
15. eef2b ENSDARG00000100371, ENSDARG00000109247 545.15 4086.07 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
16. mt-co3 ENSDARG00000063912 511.19 3831.53 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
17. mt-nd1 ENSDARG00000063895 496.87 3724.19 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
18. AL954137.2 ENSDARG00000114408 483.87 3626.75
19. ptmab ENSDARG00000101766 477.24 3577.06 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
20. hspa8 ENSDARG00000068992, ENSDARG00000114726 465.04 3485.62 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
21. apoa1b ENSDARG00000101324 461.59 3459.76 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
22. rpl10a ENSDARG00000042905, ENSDARG00000115649 439.30 3292.69 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
23. mt-cyb ENSDARG00000063924 402.16 3014.31 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
24. hsp90ab1 ENSDARG00000029150 373.51 2799.57 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
25. rps26l ENSDARG00000030408 373.51 2799.57 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
26. rpl36 ENSDARG00000100588 359.98 2698.16 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
27. zgc:161979 zgc:161979 343.54 2574.94
28. pabpc1a ENSDARG00000017219 340.35 2551.03 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
29. apoa2 ENSDARG00000015866 335.84 2517.22 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
30. rps14 ENSDARG00000036629 335.05 2511.30 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
31. rpl18a ENSDARG00000025073 333.19 2497.36 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
32. rpl23 ENSDARG00000053457 318.07 2384.03 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
33. rpl21 ENSDARG00000010516, ENSDARG00000110263 315.15 2362.15 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
34. apoc1l apoc1l 312.50 2342.28
35. cfl1 ENSDARG00000021124 310.38 2326.39 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
36. id1 ENSDARG00000040764 309.32 2318.45 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
37. rps23 ENSDARG00000021838 307.46 2304.51 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
38. rps27a ENSDARG00000032725, ENSDARG00000114059 307.19 2302.48 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
39. zgc:161979_1 zgc:161979_1 304.81 2284.64
40. rpl26 ENSDARG00000102317 300.03 2248.82 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
41. rpl8 ENSDARG00000014867 297.91 2232.93 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
42. cirbp cirbp 297.11 2226.93
43. zgc:123194 zgc:123194 292.07 2189.15
44. apobb apobb 289.16 2167.34
45. btf3 ENSDARG00000035400, ENSDARG00000116462 280.93 2105.66 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
46. rpl36a ENSDARG00000058105, ENSDARG00000112656 275.10 2061.96 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
47. actb1 ENSDARG00000037746, ENSDARG00000113649 269.52 2020.14 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
48. rpl11 ENSDARG00000043509 268.20 2010.24 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
49. si:dkeyp-86f7.3 si:dkeyp-86f7.3 267.40 2004.25
50. tpma ENSDARG00000033683 252.02 1888.97 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
51. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 250.95 1880.95 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
52. rpl9 ENSDARG00000037350, ENSDARG00000112384 249.89 1873.00 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
53. eif5a ENSDARG00000017235 243.26 1823.31 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
54. mt-co1 ENSDARG00000063905 241.67 1811.39 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
55. rplp1 ENSDARG00000021864 232.12 1739.81 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
56. ran ENSDARG00000057026 230.53 1727.89 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
57. rps15 ENSDARG00000070849, ENSDARG00000110979 223.10 1672.20 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
58. fabp3 ENSDARG00000023290 216.20 1620.49 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
59. khdrbs1a ENSDARG00000052856 214.08 1604.60 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
60. rpl19 ENSDARG00000013307 211.96 1588.71 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
61. si:ch1073-429i10.3 210.10 1574.76 si:ch1073-429i10.3, transcript variant X2
62. rps2 ENSDARG00000077291 206.39 1546.96 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
63. rpl6 ENSDARG00000058451 202.14 1515.10 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
64. h3f3a 198.16 1485.27 H3 histone, family 3A, transcript variant X1
65. rps15a ENSDARG00000010160 193.65 1451.47 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
66. hmgn2 ENSDARG00000099572 193.12 1447.49 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
67. apoa1a ENSDARG00000012076, ENSDARG00000110395 192.86 1445.55 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
68. seta ENSDARG00000031495 192.33 1441.57 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
69. rps6 ENSDARG00000019778 191.00 1431.60 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
70. top1l ENSDARG00000070545 190.21 1425.68 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
71. rps27.1 ENSDARG00000023298 189.14 1417.66 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
72. rps20 ENSDARG00000036044 186.76 1399.82 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
73. hnrnpab hnrnpab 186.49 1397.80
74. rpsa ENSDARG00000019181 184.63 1383.86 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
75. ccnd1 ENSDARG00000101637 183.57 1375.91 cyclin D1 [Source:ZFIN;Acc:ZDB-GENE-980526-176]
76. rpl27 ENSDARG00000015128 181.72 1362.05 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
77. rps19 ENSDARG00000030602 181.72 1362.05 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
78. rps12 ENSDARG00000036875, ENSDARG00000115157 179.06 1342.11 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
79. eif5a2 ENSDARG00000056186 178.53 1338.14 eukaryotic translation initiation factor 5A2 [Source:ZFIN;Acc:ZDB-GENE-040426-2405]
80. rps5 ENSDARG00000043453 175.62 1316.33 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
81. rps9 ENSDARG00000011405, ENSDARG00000113248 174.29 1306.36 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
82. RPL29 ENSDARG00000077717 172.70 1294.44 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
83. rpl39 ENSDARG00000036316, ENSDARG00000117167 167.66 1256.66 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
84. rpl35 ENSDARG00000018334 167.39 1254.64 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
85. pbx4 ENSDARG00000052150 165.53 1240.70 pre-B-cell leukemia transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-000201-18]
86. rpl5b ENSDARG00000015862, ENSDARG00000109661 163.94 1228.78 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
87. rpl18 ENSDARG00000029533 163.15 1222.86 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
88. rplp0 ENSDARG00000051783 162.62 1218.89 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
89. rps3 ENSDARG00000103007 162.62 1218.89 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
90. rps4x ENSDARG00000014690 162.35 1216.86 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
91. ppiab ENSDARG00000103994 161.82 1212.89 peptidylprolyl isomerase Ab (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-7459]
92. AC024175.17 AC024175.17 158.90 1191.00
93. hnrnpa0a ENSDARG00000089302 157.84 1183.06 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
94. ckmb ENSDARG00000040565 156.52 1173.17 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
95. apoeb ENSDARG00000040295 154.92 1161.17 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
96. h3f3d ENSDARG00000045248 154.66 1159.22 H3 histone, family 3D [Source:ZFIN;Acc:ZDB-GENE-040426-1023]
97. fkbp1aa ENSDARG00000022684 154.39 1157.20 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
98. rpl15 ENSDARG00000009285 152.27 1141.31 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
99. si:dkey-150i13.2 ENSDARG00000071052 150.68 1129.39 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
100. rps13 ENSDARG00000036298, ENSDARG00000112818 149.62 1121.45 ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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