Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_whole1, section s12.

Sample reads: 133,414. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 23813.38 178498.40
2. zgc:112425 zgc:112425 1786.48 13390.95
3. krt4 ENSDARG00000017624, ENSDARG00000115790 1389.05 10411.93 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. tmsb4x ENSDARG00000077777 1320.04 9894.65 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
5. hmga1a ENSDARG00000028335 1089.88 8169.43 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
6. mt-nd2 ENSDARG00000063899 1050.79 7876.43 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
7. actb2 ENSDARG00000037870 925.23 6935.26 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
8. mt-co2 ENSDARG00000063908 846.62 6346.03 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
9. mt-atp6 ENSDARG00000063911 795.08 5959.70 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
10. mt-nd4 ENSDARG00000063917 771.72 5784.60 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
11. eef1a1l1 ENSDARG00000020850 657.51 4928.51 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
12. si:dkey-151g10.6 si:dkey-151g10.6 651.40 4882.71
13. ppiaa ENSDARG00000009212 648.99 4864.65 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
14. pcna ENSDARG00000054155 639.17 4791.04 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
15. AL954137.2 ENSDARG00000114408 628.03 4707.54
16. eef2b ENSDARG00000100371, ENSDARG00000109247 608.81 4563.47 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
17. mt-co3 ENSDARG00000063912 537.84 4031.50 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
18. ptmab ENSDARG00000101766 513.17 3846.58 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
19. mt-nd1 ENSDARG00000063895 449.19 3367.00 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
20. hspa8 ENSDARG00000068992, ENSDARG00000114726 439.36 3293.32 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
21. rpl18a ENSDARG00000025073 412.50 3091.98 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
22. apoa1b ENSDARG00000101324 408.79 3064.17 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
23. hsp90ab1 ENSDARG00000029150 399.83 2997.01 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
24. mt-cyb ENSDARG00000063924 382.58 2867.71 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
25. rpl10a ENSDARG00000042905, ENSDARG00000115649 376.91 2825.21 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
26. pabpc1a ENSDARG00000017219 338.04 2533.85 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
27. id1 ENSDARG00000040764 334.54 2507.62 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
28. zgc:123194 zgc:123194 324.50 2432.36
29. rpl23 ENSDARG00000053457 318.82 2389.79 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
30. rpl36 ENSDARG00000100588 307.25 2303.06 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
31. rps23 ENSDARG00000021838 306.59 2298.11 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
32. rpl21 ENSDARG00000010516, ENSDARG00000110263 305.94 2293.24 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
33. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 299.60 2245.72 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
34. rpl26 ENSDARG00000102317 292.61 2193.32 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
35. cfl1 ENSDARG00000021124 282.13 2114.77 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
36. rpl8 ENSDARG00000014867 281.04 2106.60 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
37. cirbp cirbp 280.39 2101.72
38. btf3 ENSDARG00000035400, ENSDARG00000116462 276.46 2072.27 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
39. actb1 ENSDARG00000037746, ENSDARG00000113649 274.05 2054.20 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
40. si:dkeyp-86f7.3 si:dkeyp-86f7.3 271.65 2036.21
41. AC024175.17 AC024175.17 270.12 2024.74
42. rpl11 ENSDARG00000043509 262.48 1967.48 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
43. hmgn2 ENSDARG00000099572 258.33 1936.37 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
44. rps14 ENSDARG00000036629 257.24 1928.20 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
45. hbbe3 ENSDARG00000038147, ENSDARG00000109344 245.45 1839.82 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
46. khdrbs1a ENSDARG00000052856 245.23 1838.18 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
47. rpl9 ENSDARG00000037350, ENSDARG00000112384 244.79 1834.88 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
48. rps27a ENSDARG00000032725, ENSDARG00000114059 244.79 1834.88 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
49. eif5a ENSDARG00000017235 244.14 1830.00 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
50. h3f3a 242.17 1815.24 H3 histone, family 3A, transcript variant X1
51. apoc1l apoc1l 239.33 1793.95
52. rps26l ENSDARG00000030408 238.90 1790.73 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
53. rplp1 ENSDARG00000021864 230.82 1730.16 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
54. top1l ENSDARG00000070545 229.07 1717.04 DNA topoisomerase I, like [Source:ZFIN;Acc:ZDB-GENE-060616-217]
55. ran ENSDARG00000057026 227.98 1708.87 RAN, member RAS oncogene family [Source:ZFIN;Acc:ZDB-GENE-990415-88]
56. rps2 ENSDARG00000077291 225.79 1692.46 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
57. rps15 ENSDARG00000070849, ENSDARG00000110979 222.52 1667.95 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
58. rpl36a ENSDARG00000058105, ENSDARG00000112656 220.33 1651.53 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
59. pbx4 ENSDARG00000052150 218.15 1635.19 pre-B-cell leukemia transcription factor 4 [Source:ZFIN;Acc:ZDB-GENE-000201-18]
60. apobb apobb 215.97 1618.85
61. hbae3 ENSDARG00000079305 213.35 1599.21 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
62. hnrnpab hnrnpab 213.35 1599.21
63. apoa2 ENSDARG00000015866 209.63 1571.33 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
64. ccnd1 ENSDARG00000101637 206.36 1546.82 cyclin D1 [Source:ZFIN;Acc:ZDB-GENE-980526-176]
65. zgc:161979 zgc:161979 205.27 1538.65
66. seta ENSDARG00000031495 203.96 1528.83 SET nuclear proto-oncogene a [Source:ZFIN;Acc:ZDB-GENE-030131-2221]
67. rpl19 ENSDARG00000013307 202.65 1519.01 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
68. zgc:56493 ENSDARG00000031435 193.91 1453.49 zgc:56493 [Source:ZFIN;Acc:ZDB-GENE-030131-8581]
69. mt-co1 ENSDARG00000063905 193.04 1446.97 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
70. zgc:161979_1 zgc:161979_1 191.29 1433.86
71. eif5a2 ENSDARG00000056186 191.07 1432.21 eukaryotic translation initiation factor 5A2 [Source:ZFIN;Acc:ZDB-GENE-040426-2405]
72. si:ch1073-429i10.3 189.98 1424.04 si:ch1073-429i10.3, transcript variant X2
73. rpl6 ENSDARG00000058451 188.45 1412.57 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
74. rps15a ENSDARG00000010160 187.80 1407.70 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
75. tpma ENSDARG00000033683 186.71 1399.53 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
76. fabp3 ENSDARG00000023290 186.49 1397.88 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
77. rpl27 ENSDARG00000015128 183.21 1373.29 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
78. rplp0 ENSDARG00000051783 181.90 1363.47 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
79. rps27.1 ENSDARG00000023298 177.97 1334.01 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
80. rps6 ENSDARG00000019778 177.75 1332.36 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
81. rps4x ENSDARG00000014690 168.14 1260.33 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
82. RPL29 ENSDARG00000077717 167.27 1253.81 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
83. rpsa ENSDARG00000019181 165.52 1240.69 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
84. rps12 ENSDARG00000036875, ENSDARG00000115157 165.09 1237.47 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
85. hnrnpa0a ENSDARG00000089302 163.12 1222.70 heterogeneous nuclear ribonucleoprotein A0a [Source:ZFIN;Acc:ZDB-GENE-030131-2249]
86. rpl35 ENSDARG00000018334 163.12 1222.70 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
87. rpl15 ENSDARG00000009285 160.50 1203.06 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
88. si:dkey-150i13.2 ENSDARG00000071052 160.50 1203.06 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
89. rps20 ENSDARG00000036044 159.85 1198.19 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
90. ppiab ENSDARG00000103994 159.41 1194.89 peptidylprolyl isomerase Ab (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-7459]
91. ckmb ENSDARG00000040565 155.92 1168.73 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
92. rpl5b ENSDARG00000015862, ENSDARG00000109661 155.70 1167.08 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
93. marcksb ENSDARG00000008803 153.30 1149.09 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
94. fkbp1aa ENSDARG00000022684 152.20 1140.85 FK506 binding protein 1Aa [Source:ZFIN;Acc:ZDB-GENE-030131-7275]
95. rps3 ENSDARG00000103007 151.11 1132.68 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
96. faua ENSDARG00000099022 145.00 1086.88 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
97. rps9 ENSDARG00000011405, ENSDARG00000113248 143.69 1077.06 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
98. rps10 ENSDARG00000034897 142.81 1070.46 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
99. pnrc2 ENSDARG00000053291, ENSDARG00000112537 142.38 1067.24 proline-rich nuclear receptor coactivator 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5475]
100. tuba8l ENSDARG00000042708 142.16 1065.59 tubulin, alpha 8 like [Source:ZFIN;Acc:ZDB-GENE-030131-9167]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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