Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_trunk2, section s7.

Sample reads: 133,394. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 28279.70 212000.86
2. krt4 ENSDARG00000017624, ENSDARG00000115790 2054.03 15398.19 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. mt-nd2 ENSDARG00000063899 1583.84 11873.37 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
4. mt-co2 ENSDARG00000063908 1230.76 9226.48 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
5. tpma ENSDARG00000033683 1198.82 8987.04 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
6. mt-co3 ENSDARG00000063912 1106.56 8295.41 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
7. mt-atp6 ENSDARG00000063911 1010.16 7572.74 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
8. mt-nd4 ENSDARG00000063917 933.27 6996.33 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
9. ckmb ENSDARG00000040565 922.63 6916.56 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
10. ckma ENSDARG00000035327, ENSDARG00000114671 857.57 6428.84 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
11. eef1a1l1 ENSDARG00000020850 807.89 6056.41 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
12. mt-nd1 ENSDARG00000063895 779.50 5843.58 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
13. actb2 ENSDARG00000037870 735.74 5515.53 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
14. apoc1l apoc1l 699.07 5240.63
15. actc1b ENSDARG00000099197 690.79 5178.56 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
16. si:dkey-151g10.6 si:dkey-151g10.6 678.96 5089.87
17. tmsb4x ENSDARG00000077777 654.12 4903.66 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
18. hbbe3 ENSDARG00000038147, ENSDARG00000109344 647.61 4854.86 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
19. apoeb ENSDARG00000040295 542.34 4065.69 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
20. ppiaa ENSDARG00000009212 537.61 4030.23 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
21. eef2b ENSDARG00000100371, ENSDARG00000109247 531.69 3985.85 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
22. atp2a1 ENSDARG00000020574 524.60 3932.70 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
23. zgc:161979 zgc:161979 516.91 3875.05
24. apobb apobb 503.30 3773.03
25. mt-cyb ENSDARG00000063924 503.30 3773.03 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
26. apoa1b ENSDARG00000101324 502.12 3764.18 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
27. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 468.41 3511.47 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
28. zgc:66286 zgc:66286 455.40 3413.94
29. zgc:161979_1 zgc:161979_1 447.71 3356.29
30. hspa8 ENSDARG00000068992, ENSDARG00000114726 442.98 3320.83 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
31. actb1 ENSDARG00000037746, ENSDARG00000113649 441.20 3307.49 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
32. rpl10a ENSDARG00000042905, ENSDARG00000115649 431.15 3232.15 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
33. rpl18a ENSDARG00000025073 412.82 3094.74 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
34. apoa2 ENSDARG00000015866 407.49 3054.78 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
35. hbae3 ENSDARG00000079305 405.72 3041.51 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
36. rpl23 ENSDARG00000053457 403.94 3028.17 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
37. si:dkey-150i13.2 ENSDARG00000071052 398.03 2983.86 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
38. mylz3 ENSDARG00000017441 367.28 2753.34 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
39. rpl26 ENSDARG00000102317 366.69 2748.92 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
40. rpl8 ENSDARG00000014867 365.50 2740.00 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
41. btf3 ENSDARG00000035400, ENSDARG00000116462 364.91 2735.57 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
42. tnnc2 ENSDARG00000070835, ENSDARG00000111155 359.00 2691.27 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
43. myl10 ENSDARG00000062592 354.86 2660.23 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
44. myhz1.3 ENSDARG00000067997 351.31 2633.62 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
45. zgc:112425 zgc:112425 338.89 2540.51
46. ttna ttna 338.30 2536.09
47. rpl36a ENSDARG00000058105, ENSDARG00000112656 335.93 2518.32 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
48. hmga1a ENSDARG00000028335 317.60 2380.91 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
49. mt-co1 ENSDARG00000063905 308.13 2309.92 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
50. eif5a ENSDARG00000017235 305.77 2292.23 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
51. rpl21 ENSDARG00000010516, ENSDARG00000110263 305.77 2292.23 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
52. rps14 ENSDARG00000036629 305.77 2292.23 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
53. acta1a ENSDARG00000036371 305.18 2287.80 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
54. hbbe1.1 ENSDARG00000113599 301.04 2256.77 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
55. fabp3 ENSDARG00000023290 299.26 2243.42 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
56. rpl11 ENSDARG00000043509 296.31 2221.31 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
57. rps27a ENSDARG00000032725, ENSDARG00000114059 292.17 2190.27 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
58. rps23 ENSDARG00000021838 291.57 2185.78 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
59. rpl9 ENSDARG00000037350, ENSDARG00000112384 290.98 2181.35 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
60. acta1b ENSDARG00000055618 272.65 2043.94 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
61. rps2 ENSDARG00000077291 264.96 1986.29 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
62. ttnb ttnb 263.78 1977.45
63. apoa1a ENSDARG00000012076, ENSDARG00000110395 262.00 1964.10 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
64. tpm3 ENSDARG00000005162 262.00 1964.10 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
65. hsp90aa1.1 ENSDARG00000010478 256.09 1919.80 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
66. rpl19 ENSDARG00000013307 253.13 1897.61 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
67. rpl27 ENSDARG00000015128 250.77 1879.92 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
68. rpl7 ENSDARG00000007320 237.75 1782.31 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
69. rplp1 ENSDARG00000021864 226.52 1698.12 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
70. rps9 ENSDARG00000011405, ENSDARG00000113248 226.52 1698.12 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
71. rpsa ENSDARG00000019181 218.83 1640.48 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
72. rpl36 ENSDARG00000100588 215.87 1618.29 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
73. rps15 ENSDARG00000070849, ENSDARG00000110979 215.87 1618.29 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
74. rps6 ENSDARG00000019778 212.91 1596.10 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
75. hbae1_1 209.37 1569.56 hemoglobin, alpha embryonic 1
76. rps26l ENSDARG00000030408 208.77 1565.06 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
77. rpl18 ENSDARG00000029533 208.18 1560.64 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
78. AL935210.1 ENSDARG00000088330 204.63 1534.02 hemoglobin, alpha embryonic 1.3 [Source:NCBI gene;Acc:572729]
79. myl1 ENSDARG00000014196 202.27 1516.33 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
80. ctsla ENSDARG00000007836 201.09 1507.49 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
81. ATP5B 199.90 1498.57 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
82. rplp0 ENSDARG00000051783 198.13 1485.30 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
83. rpl15 ENSDARG00000009285 196.35 1471.95 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
84. rps3 ENSDARG00000103007 195.76 1467.53 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
85. tnnt2c ENSDARG00000032242 188.67 1414.38 troponin T2c, cardiac [Source:ZFIN;Acc:ZDB-GENE-030520-1]
86. col2a1a ENSDARG00000069093, ENSDARG00000111202 186.89 1401.03 collagen, type II, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-980526-192]
87. rps4x ENSDARG00000014690 186.30 1396.61 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
88. myhz2 ENSDARG00000012944 183.34 1374.42 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
89. rpl6 ENSDARG00000058451 183.34 1374.42 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
90. rpl5b ENSDARG00000015862, ENSDARG00000109661 182.16 1365.58 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
91. rps24 ENSDARG00000039347 181.57 1361.15 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
92. tnni2b.1 ENSDARG00000035958 180.98 1356.73 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
93. smyhc1 ENSDARG00000099959, ENSDARG00000115916 179.20 1343.39 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
94. efemp2a ENSDARG00000094324 176.84 1325.69 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
95. rps27.1 ENSDARG00000023298 176.84 1325.69 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
96. AC024175.17 AC024175.17 176.25 1321.27
97. aldoab ENSDARG00000034470 175.06 1312.35 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
98. faua ENSDARG00000099022 172.70 1294.66 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
99. zgc:153129 zgc:153129 171.51 1285.74
100. h1f0 ENSDARG00000038559 167.37 1254.70 H1 histone family, member 0 [Source:ZFIN;Acc:ZDB-GENE-030131-337]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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