Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_trunk2, section s6.

Sample reads: 133,392. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 25297.89 189651.28
2. mt-nd2 ENSDARG00000063899 1666.19 12490.97 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 1644.85 12330.99 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. tpma ENSDARG00000033683 1469.20 11014.19 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
5. mt-co2 ENSDARG00000063908 1462.09 10960.88 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. mt-nd4 ENSDARG00000063917 1159.86 8695.15 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
7. mt-co3 ENSDARG00000063912 1149.19 8615.16 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
8. ckmb ENSDARG00000040565 1020.48 7650.26 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
9. mt-atp6 ENSDARG00000063911 1004.12 7527.61 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
10. eef1a1l1 ENSDARG00000020850 920.21 6898.56 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
11. ckma ENSDARG00000035327, ENSDARG00000114671 905.99 6791.96 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
12. actc1b ENSDARG00000099197 901.01 6754.62 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
13. mt-nd1 ENSDARG00000063895 876.12 6568.03 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
14. actb2 ENSDARG00000037870 709.00 5315.18 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
15. si:dkey-151g10.6 si:dkey-151g10.6 645.71 4840.71
16. apoc1l apoc1l 630.78 4728.78
17. mt-cyb ENSDARG00000063924 620.82 4654.12 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
18. ppiaa ENSDARG00000009212 605.89 4542.19 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
19. atp2a1 ENSDARG00000020574 565.35 4238.27 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
20. eef2b ENSDARG00000100371, ENSDARG00000109247 549.71 4121.02 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
21. tmsb4x ENSDARG00000077777 535.48 4014.35 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
22. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 531.93 3987.73 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
23. mylz3 ENSDARG00000017441 516.99 3875.73 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
24. rpl10a ENSDARG00000042905, ENSDARG00000115649 510.59 3827.75 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
25. zgc:161979 zgc:161979 498.51 3737.19
26. apoa1b ENSDARG00000101324 480.02 3598.58 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
27. si:dkey-150i13.2 ENSDARG00000071052 480.02 3598.58 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
28. zgc:66286 zgc:66286 473.62 3550.60
29. apobb apobb 445.17 3337.32
30. zgc:161979_1 zgc:161979_1 445.17 3337.32
31. hspa8 ENSDARG00000068992, ENSDARG00000114726 442.33 3316.03 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
32. apoeb ENSDARG00000040295 433.08 3246.68 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
33. acta1b ENSDARG00000055618 420.99 3156.05 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
34. btf3 ENSDARG00000035400, ENSDARG00000116462 414.59 3108.07 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
35. apoa2 ENSDARG00000015866 407.48 3054.76 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
36. rpl26 ENSDARG00000102317 395.39 2964.13 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
37. rpl23 ENSDARG00000053457 393.26 2948.16 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
38. rpl8 ENSDARG00000014867 384.72 2884.14 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
39. tnnc2 ENSDARG00000070835, ENSDARG00000111155 384.72 2884.14 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
40. rpl18a ENSDARG00000025073 382.59 2868.17 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
41. eif5a ENSDARG00000017235 364.10 2729.56 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
42. mt-co1 ENSDARG00000063905 363.39 2724.23 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
43. myl10 ENSDARG00000062592 362.68 2718.91 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
44. rps14 ENSDARG00000036629 356.99 2676.26 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
45. actb1 ENSDARG00000037746, ENSDARG00000113649 352.72 2644.24 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
46. rpl36a ENSDARG00000058105, ENSDARG00000112656 352.72 2644.24 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
47. myhz1.3 ENSDARG00000067997 350.59 2628.28 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
48. rps27a ENSDARG00000032725, ENSDARG00000114059 345.61 2590.94 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
49. acta1a ENSDARG00000036371 332.81 2494.98 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
50. hbbe3 ENSDARG00000038147, ENSDARG00000109344 330.68 2479.02 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
51. ttna ttna 327.83 2457.65
52. rps26l ENSDARG00000030408 321.43 2409.67 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
53. rps23 ENSDARG00000021838 315.74 2367.02 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
54. rpl21 ENSDARG00000010516, ENSDARG00000110263 311.48 2335.08 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
55. hsp90aa1.1 ENSDARG00000010478 310.77 2329.76 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
56. hmga1a ENSDARG00000028335 310.05 2324.36 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
57. rpl11 ENSDARG00000043509 309.34 2319.04 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
58. myl1 ENSDARG00000014196 290.85 2180.42 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
59. zgc:112425 zgc:112425 282.32 2116.47
60. rps2 ENSDARG00000077291 281.61 2111.15 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
61. tnni2b.1 ENSDARG00000035958 281.61 2111.15 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
62. tpm3 ENSDARG00000005162 280.90 2105.83 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
63. rpl7 ENSDARG00000007320 279.48 2095.18 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
64. rpl27 ENSDARG00000015128 271.65 2036.48 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
65. rpl18 ENSDARG00000029533 270.94 2031.16 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
66. rpsa ENSDARG00000019181 261.70 1961.89 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
67. rpl9 ENSDARG00000037350, ENSDARG00000112384 243.92 1828.60 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
68. ttnb ttnb 242.50 1817.96
69. aldoab ENSDARG00000034470 238.94 1791.27 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
70. rpl19 ENSDARG00000013307 238.94 1791.27 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
71. rps9 ENSDARG00000011405, ENSDARG00000113248 238.94 1791.27 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
72. rpl15 ENSDARG00000009285 236.10 1769.98 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
73. apoa1a ENSDARG00000012076, ENSDARG00000110395 233.25 1748.61 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
74. fabp3 ENSDARG00000023290 233.25 1748.61 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
75. myhz2 ENSDARG00000012944 231.83 1737.97 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
76. rpl36 ENSDARG00000100588 229.70 1722.00 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
77. rps19 ENSDARG00000030602 228.99 1716.67 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
78. rpl5b ENSDARG00000015862, ENSDARG00000109661 217.61 1631.36 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
79. ATP5B 216.90 1626.04 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
80. rplp1 ENSDARG00000021864 214.05 1604.67 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
81. rps15a ENSDARG00000010160 214.05 1604.67 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
82. rps3 ENSDARG00000103007 214.05 1604.67 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
83. tnnt2c ENSDARG00000032242 214.05 1604.67 troponin T2c, cardiac [Source:ZFIN;Acc:ZDB-GENE-030520-1]
84. rplp0 ENSDARG00000051783 212.63 1594.03 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
85. rps6 ENSDARG00000019778 212.63 1594.03 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
86. RPL29 ENSDARG00000077717 210.50 1578.06 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
87. rps20 ENSDARG00000036044 209.78 1572.66 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
88. rpl14 ENSDARG00000103433 207.65 1556.69 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
89. rps27.1 ENSDARG00000023298 207.65 1556.69 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
90. hbae3 ENSDARG00000079305 206.94 1551.37 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
91. faua ENSDARG00000099022 205.52 1540.73 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
92. rps15 ENSDARG00000070849, ENSDARG00000110979 203.38 1524.68 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
93. pabpc1a ENSDARG00000017219 200.54 1503.39 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
94. rps12 ENSDARG00000036875, ENSDARG00000115157 198.41 1487.42 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
95. rps4x ENSDARG00000014690 193.43 1450.09 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
96. rps3a ENSDARG00000035692, ENSDARG00000114628, ENSDARG00000115378 184.18 1380.75 ribosomal protein S3A [Source:ZFIN;Acc:ZDB-GENE-030131-9184]
97. rpl6 ENSDARG00000058451 182.76 1370.10 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
98. atp5g3b 180.63 1354.13 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit c3 (subunit 9) b, transcript variant X1
99. h1f0 ENSDARG00000038559 179.92 1348.81 H1 histone family, member 0 [Source:ZFIN;Acc:ZDB-GENE-030131-337]
100. tnnt3a ENSDARG00000030270 176.36 1322.12 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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