Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_trunk2, section s4.

Sample reads: 133,395. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 34210.69 256461.43
2. tpma ENSDARG00000033683 1385.57 10386.97 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. krt4 ENSDARG00000017624, ENSDARG00000115790 1250.41 9373.73 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
4. mt-nd2 ENSDARG00000063899 1221.06 9153.71 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
5. mt-co2 ENSDARG00000063908 1085.89 8140.41 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. ckmb ENSDARG00000040565 982.14 7362.64 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
7. actc1b ENSDARG00000099197 936.67 7021.77 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
8. mt-nd4 ENSDARG00000063917 926.75 6947.41 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
9. mt-atp6 ENSDARG00000063911 896.99 6724.31 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
10. mt-co3 ENSDARG00000063912 877.14 6575.51 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
11. ckma ENSDARG00000035327, ENSDARG00000114671 864.74 6482.55 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
12. eef1a1l1 ENSDARG00000020850 822.58 6166.49 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
13. mt-nd1 ENSDARG00000063895 735.78 5515.80 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
14. atp2a1 ENSDARG00000020574 646.49 4846.43 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
15. actb2 ENSDARG00000037870 603.50 4524.16 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
16. hbbe3 ENSDARG00000038147, ENSDARG00000109344 594.41 4456.01 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
17. si:dkey-151g10.6 si:dkey-151g10.6 553.90 4152.33
18. apoc1l apoc1l 543.56 4074.81
19. eef2b ENSDARG00000100371, ENSDARG00000109247 536.95 4025.26 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
20. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 520.00 3898.20 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
21. mylz3 ENSDARG00000017441 500.58 3752.61 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
22. ppiaa ENSDARG00000009212 498.51 3737.09 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
23. AC024175.17 AC024175.17 469.99 3523.29
24. rpl10a ENSDARG00000042905, ENSDARG00000115649 450.56 3377.64 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
25. ttna ttna 426.58 3197.87
26. myhz1.3 ENSDARG00000067997 417.08 3126.65 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
27. mt-cyb ENSDARG00000063924 410.05 3073.95 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
28. si:dkey-150i13.2 ENSDARG00000071052 407.57 3055.36 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
29. zgc:66286 zgc:66286 404.26 3030.55
30. rpl23 ENSDARG00000053457 403.44 3024.40 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
31. tnnc2 ENSDARG00000070835, ENSDARG00000111155 388.14 2909.70 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
32. ttnb ttnb 376.98 2826.04
33. acta1b ENSDARG00000055618 375.74 2816.75 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
34. myl10 ENSDARG00000062592 374.92 2810.60 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
35. hbae3 ENSDARG00000079305 374.09 2804.38 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
36. hspa8 ENSDARG00000068992, ENSDARG00000114726 371.19 2782.64 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
37. rpl8 ENSDARG00000014867 368.71 2764.05 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
38. apoeb ENSDARG00000040295 367.89 2757.90 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
39. rpl18a ENSDARG00000025073 362.10 2714.49 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
40. tmsb4x ENSDARG00000077777 362.10 2714.49 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
41. zgc:161979 zgc:161979 358.38 2686.61
42. rpl21 ENSDARG00000010516, ENSDARG00000110263 355.90 2668.01 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
43. apoa1b ENSDARG00000101324 352.18 2640.13 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
44. hmga1a ENSDARG00000028335 340.19 2550.24 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
45. btf3 ENSDARG00000035400, ENSDARG00000116462 339.37 2544.10 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
46. apobb apobb 329.03 2466.58
47. zgc:112425 zgc:112425 324.90 2435.62
48. apoa2 ENSDARG00000015866 324.07 2429.40 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
49. zgc:161979_1 zgc:161979_1 315.80 2367.40
50. rpl26 ENSDARG00000102317 315.39 2364.33 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
51. acta1a ENSDARG00000036371 313.74 2351.96 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
52. eif5a ENSDARG00000017235 305.06 2286.89 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
53. rpl11 ENSDARG00000043509 284.39 2131.94 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
54. rps27a ENSDARG00000032725, ENSDARG00000114059 281.91 2113.35 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
55. rps23 ENSDARG00000021838 281.08 2107.12 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
56. rps14 ENSDARG00000036629 264.96 1986.28 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
57. mt-co1 ENSDARG00000063905 261.66 1961.54 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
58. rpl9 ENSDARG00000037350, ENSDARG00000112384 261.24 1958.39 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
59. rpl36a ENSDARG00000058105, ENSDARG00000112656 257.93 1933.58 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
60. actb1 ENSDARG00000037746, ENSDARG00000113649 255.87 1918.14 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
61. rpl7 ENSDARG00000007320 255.87 1918.14 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
62. rplp1 ENSDARG00000021864 252.56 1893.32 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
63. rps2 ENSDARG00000077291 250.49 1877.81 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
64. hsp90aa1.1 ENSDARG00000010478 248.84 1865.44 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
65. rpl19 ENSDARG00000013307 234.37 1756.96 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
66. rpl27 ENSDARG00000015128 232.31 1741.52 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
67. myl1 ENSDARG00000014196 230.65 1729.07 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
68. rps9 ENSDARG00000011405, ENSDARG00000113248 227.35 1704.34 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
69. tnni2b.1 ENSDARG00000035958 226.52 1698.11 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
70. rpl18 ENSDARG00000029533 226.11 1695.04 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
71. rplp0 ENSDARG00000051783 224.04 1679.52 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
72. fabp3 ENSDARG00000023290 222.80 1670.23 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
73. rpl15 ENSDARG00000009285 219.49 1645.41 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
74. myhz2 ENSDARG00000012944 214.95 1611.38 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
75. tpm3 ENSDARG00000005162 212.47 1592.79 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
76. rps6 ENSDARG00000019778 212.05 1589.64 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
77. rpl36 ENSDARG00000100588 211.64 1586.57 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
78. h1f0 ENSDARG00000038559 209.57 1571.05 H1 histone family, member 0 [Source:ZFIN;Acc:ZDB-GENE-030131-337]
79. ATP5B 207.92 1558.68 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
80. rps5 ENSDARG00000043453 199.24 1493.61 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
81. rps26l ENSDARG00000030408 198.82 1490.46 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
82. aldoab ENSDARG00000034470 191.80 1437.83 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
83. hbbe1.1 ENSDARG00000113599 191.80 1437.83 hemoglobin beta embryonic-1.1 [Source:ZFIN;Acc:ZDB-GENE-030616-7]
84. tnnt2c ENSDARG00000032242 191.80 1437.83 troponin T2c, cardiac [Source:ZFIN;Acc:ZDB-GENE-030520-1]
85. rps20 ENSDARG00000036044 190.14 1425.39 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
86. smyhc1 ENSDARG00000099959, ENSDARG00000115916 189.73 1422.32 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
87. pvalb2 ENSDARG00000002768, ENSDARG00000114085 186.01 1394.43 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
88. hbae1_1 185.18 1388.21 hemoglobin, alpha embryonic 1
89. rps15 ENSDARG00000070849, ENSDARG00000110979 184.36 1382.06 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
90. rpsa ENSDARG00000019181 183.12 1372.76 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
91. rps3 ENSDARG00000103007 179.81 1347.95 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
92. rps4x ENSDARG00000014690 173.20 1298.40 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
93. rpl5b ENSDARG00000015862, ENSDARG00000109661 172.78 1295.25 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
94. rpl6 ENSDARG00000058451 172.78 1295.25 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
95. rps15a ENSDARG00000010160 171.96 1289.10 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
96. pabpc1a ENSDARG00000017219 170.72 1279.81 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
97. apoa1a ENSDARG00000012076, ENSDARG00000110395 166.58 1248.77 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
98. RPL29 ENSDARG00000077717 165.76 1242.62 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
99. tnnt3a ENSDARG00000030270 163.69 1227.11 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
100. AL935210.1 ENSDARG00000088330 162.86 1220.88 hemoglobin, alpha embryonic 1.3 [Source:NCBI gene;Acc:572729]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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