Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_trunk2, section s3.

Sample reads: 133,413. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 27515.06 206240.31
2. tpma ENSDARG00000033683 1590.65 11922.79 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. mt-nd2 ENSDARG00000063899 1458.67 10933.52 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
4. ckmb ENSDARG00000040565 1273.55 9545.95 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
5. krt4 ENSDARG00000017624, ENSDARG00000115790 1200.70 8999.90 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
6. mt-co2 ENSDARG00000063908 1175.85 8813.63 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. ckma ENSDARG00000035327, ENSDARG00000114671 1099.15 8238.73 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
8. mt-co3 ENSDARG00000063912 1063.15 7968.89 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
9. mt-atp6 ENSDARG00000063911 1051.15 7878.94 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
10. actc1b ENSDARG00000099197 1016.01 7615.55 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
11. eef1a1l1 ENSDARG00000020850 925.17 6934.65 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
12. mt-nd4 ENSDARG00000063917 902.88 6767.58 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
13. mt-nd1 ENSDARG00000063895 767.04 5749.38 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
14. atp2a1 ENSDARG00000020574 703.62 5274.01 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
15. si:dkey-151g10.6 si:dkey-151g10.6 654.34 4904.63
16. actb2 ENSDARG00000037870 591.35 4432.49 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
17. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 588.78 4413.23 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
18. eef2b ENSDARG00000100371, ENSDARG00000109247 565.21 4236.56 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
19. ppiaa ENSDARG00000009212 552.79 4143.46 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
20. mylz3 ENSDARG00000017441 514.22 3854.36 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
21. rpl23 ENSDARG00000053457 507.36 3802.94 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
22. acta1b ENSDARG00000055618 474.80 3558.88 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
23. mt-cyb ENSDARG00000063924 469.65 3520.28 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
24. myhz1.3 ENSDARG00000067997 468.80 3513.91 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
25. rpl10a ENSDARG00000042905, ENSDARG00000115649 455.08 3411.07 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
26. hbbe3 ENSDARG00000038147, ENSDARG00000109344 452.51 3391.81 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
27. rpl18a ENSDARG00000025073 441.80 3311.53 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
28. zgc:112425 zgc:112425 440.52 3301.94
29. tnnc2 ENSDARG00000070835, ENSDARG00000111155 431.94 3237.62 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
30. rpl8 ENSDARG00000014867 420.80 3154.12 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
31. si:dkey-150i13.2 ENSDARG00000071052 419.52 3144.53 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
32. zgc:66286 zgc:66286 416.95 3125.27
33. tmsb4x ENSDARG00000077777 416.52 3122.04 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
34. hmga1a ENSDARG00000028335 408.80 3064.18 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
35. hspa8 ENSDARG00000068992, ENSDARG00000114726 395.52 2964.64 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
36. btf3 ENSDARG00000035400, ENSDARG00000116462 392.52 2942.15 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
37. rpl26 ENSDARG00000102317 386.95 2900.40 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
38. ttna ttna 371.95 2787.97
39. acta1a ENSDARG00000036371 355.67 2665.94 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
40. apoc1l apoc1l 347.96 2608.15
41. rps23 ENSDARG00000021838 344.10 2579.22 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
42. eif5a ENSDARG00000017235 335.96 2518.20 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
43. rpl21 ENSDARG00000010516, ENSDARG00000110263 332.53 2492.49 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
44. myl10 ENSDARG00000062592 330.81 2479.60 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
45. rpl36a ENSDARG00000058105, ENSDARG00000112656 316.67 2373.61 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
46. fabp3 ENSDARG00000023290 312.82 2344.76 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
47. rps14 ENSDARG00000036629 308.10 2309.38 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
48. myl1 ENSDARG00000014196 302.10 2264.40 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
49. ttnb ttnb 302.10 2264.40
50. rps27a ENSDARG00000032725, ENSDARG00000114059 297.82 2232.32 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
51. hsp90aa1.1 ENSDARG00000010478 282.39 2116.67 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
52. rpl11 ENSDARG00000043509 281.11 2107.07 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
53. rps2 ENSDARG00000077291 281.11 2107.07 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
54. rpl9 ENSDARG00000037350, ENSDARG00000112384 280.68 2103.85 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
55. actb1 ENSDARG00000037746, ENSDARG00000113649 276.82 2074.92 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
56. zgc:161979 zgc:161979 269.54 2020.35
57. rpl19 ENSDARG00000013307 266.54 1997.86 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
58. myhz2 ENSDARG00000012944 263.54 1975.38 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
59. mt-co1 ENSDARG00000063905 261.82 1962.48 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
60. rpl27 ENSDARG00000015128 259.68 1946.44 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
61. ATP5B 258.40 1936.85 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
62. rpl7 ENSDARG00000007320 257.11 1927.18 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
63. rpl36 ENSDARG00000100588 253.68 1901.47 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
64. tpm3 ENSDARG00000005162 250.68 1878.98 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
65. hbae3 ENSDARG00000079305 249.83 1872.61 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
66. apoa1b ENSDARG00000101324 249.40 1869.39 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
67. rps6 ENSDARG00000019778 248.54 1862.94 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
68. rpl15 ENSDARG00000009285 246.40 1846.90 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
69. rplp1 ENSDARG00000021864 243.40 1824.42 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
70. rps3 ENSDARG00000103007 236.97 1776.22 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
71. apoeb ENSDARG00000040295 236.11 1769.77 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
72. rps15 ENSDARG00000070849, ENSDARG00000110979 232.26 1740.91 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
73. zgc:161979_1 zgc:161979_1 228.40 1711.98
74. pvalb2 ENSDARG00000002768, ENSDARG00000114085 227.97 1708.76 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
75. tnni2b.1 ENSDARG00000035958 227.54 1705.54 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
76. rps9 ENSDARG00000011405, ENSDARG00000113248 226.69 1699.16 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
77. rpl18 ENSDARG00000029533 224.11 1679.83 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
78. tnnt2c ENSDARG00000032242 222.83 1670.23 troponin T2c, cardiac [Source:ZFIN;Acc:ZDB-GENE-030520-1]
79. h1f0 ENSDARG00000038559 221.54 1660.56 H1 histone family, member 0 [Source:ZFIN;Acc:ZDB-GENE-030131-337]
80. rplp0 ENSDARG00000051783 213.40 1599.55 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
81. apoa2 ENSDARG00000015866 205.69 1541.76 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
82. apobb apobb 205.26 1538.54
83. rps4x ENSDARG00000014690 205.26 1538.54 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
84. smyhc1 ENSDARG00000099959, ENSDARG00000115916 203.55 1525.72 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
85. rps20 ENSDARG00000036044 199.26 1493.56 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
86. rps19 ENSDARG00000030602 194.12 1455.03 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
87. hsp90ab1 ENSDARG00000029150 193.69 1451.81 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
88. si:dkeyp-86f7.3 si:dkeyp-86f7.3 192.40 1442.14
89. rpsa ENSDARG00000019181 191.98 1438.99 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
90. rps27.1 ENSDARG00000023298 191.55 1435.77 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
91. rps15a ENSDARG00000010160 191.12 1432.55 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
92. tnnt3a ENSDARG00000030270 188.12 1410.06 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
93. rps24 ENSDARG00000039347 187.69 1406.84 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
94. rps26l ENSDARG00000030408 187.26 1403.62 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
95. RPL29 ENSDARG00000077717 184.69 1384.35 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
96. rpl6 ENSDARG00000058451 183.41 1374.76 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
97. rps12 ENSDARG00000036875, ENSDARG00000115157 182.55 1368.31 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
98. aldoab ENSDARG00000034470 182.12 1365.09 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
99. rpl5b ENSDARG00000015862, ENSDARG00000109661 180.41 1352.27 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
100. col1a1a ENSDARG00000012405, ENSDARG00000116113 172.69 1294.41 collagen, type I, alpha 1a [Source:ZFIN;Acc:ZDB-GENE-030131-9102]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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