Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_trunk2, section s25.

Sample reads: 133,401. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 18863.02 141400.65
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4667.14 34985.73 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. eef1a1l1 ENSDARG00000020850 1750.18 13119.67 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
4. mt-nd2 ENSDARG00000063899 1750.18 13119.67 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
5. mt-nd4 ENSDARG00000063917 1555.71 11661.89 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
6. si:dkey-151g10.6 si:dkey-151g10.6 1555.71 11661.89
7. tpma ENSDARG00000033683 1555.71 11661.89 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
8. tmsb4x ENSDARG00000077777 1361.25 10204.18 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
9. ckmb ENSDARG00000040565 1166.78 8746.40 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
10. krt8 ENSDARG00000058358, ENSDARG00000109279 1166.78 8746.40 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
11. mt-atp6 ENSDARG00000063911 1166.78 8746.40 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
12. mt-nd1 ENSDARG00000063895 1166.78 8746.40 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
13. rpl10a ENSDARG00000042905, ENSDARG00000115649 1166.78 8746.40 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
14. BX511252.1 BX511252.1 972.32 7288.69
15. mt-co1 ENSDARG00000063905 972.32 7288.69 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
16. ppiaa ENSDARG00000009212 972.32 7288.69 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
17. actb1 ENSDARG00000037746, ENSDARG00000113649 777.86 5830.98 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
18. mylz3 ENSDARG00000017441 777.86 5830.98 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
19. rpl22 ENSDARG00000070437 777.86 5830.98 ribosomal protein L22 [Source:ZFIN;Acc:ZDB-GENE-051113-276]
20. rpl36 ENSDARG00000100588 777.86 5830.98 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
21. rpl9 ENSDARG00000037350, ENSDARG00000112384 777.86 5830.98 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
22. rps24 ENSDARG00000039347 777.86 5830.98 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
23. zgc:92533 zgc:92533 777.86 5830.98
24. AL954137.2 ENSDARG00000114408 583.39 4373.20
25. actc1b ENSDARG00000099197 583.39 4373.20 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
26. apoeb ENSDARG00000040295 583.39 4373.20 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
27. atp2a1 ENSDARG00000020574 583.39 4373.20 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
28. faua ENSDARG00000099022 583.39 4373.20 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
29. hmga1a ENSDARG00000028335 583.39 4373.20 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
30. hsp90ab1 ENSDARG00000029150 583.39 4373.20 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
31. mt-co2 ENSDARG00000063908 583.39 4373.20 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
32. mt-co3 ENSDARG00000063912 583.39 4373.20 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
33. mt-cyb ENSDARG00000063924 583.39 4373.20 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
34. myhz1.3 ENSDARG00000067997 583.39 4373.20 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
35. oaz1a ENSDARG00000071403 583.39 4373.20 ornithine decarboxylase antizyme 1a [Source:ZFIN;Acc:ZDB-GENE-020731-4]
36. oaz1b ENSDARG00000104782 583.39 4373.20 ornithine decarboxylase antizyme 1b [Source:ZFIN;Acc:ZDB-GENE-020731-5]
37. pfn1 ENSDARG00000088091 583.39 4373.20 profilin 1 [Source:ZFIN;Acc:ZDB-GENE-031002-33]
38. rpl18a ENSDARG00000025073 583.39 4373.20 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
39. rpl23 ENSDARG00000053457 583.39 4373.20 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
40. rplp1 ENSDARG00000021864 583.39 4373.20 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
41. rps20 ENSDARG00000036044 583.39 4373.20 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
42. rps27a ENSDARG00000032725, ENSDARG00000114059 583.39 4373.20 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
43. ttnb ttnb 583.39 4373.20
44. uba52 ENSDARG00000041435 583.39 4373.20 ubiquitin A-52 residue ribosomal protein fusion product 1 [Source:ZFIN;Acc:ZDB-GENE-051023-7]
45. CYYR1 ENSDARG00000103783 388.93 2915.49 cysteine/tyrosine-rich 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2356]
46. RPS17L RPS17L 388.93 2915.49
47. acta1b ENSDARG00000055618 388.93 2915.49 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
48. apoc1l apoc1l 388.93 2915.49
49. casq2 ENSDARG00000008982 388.93 2915.49 calsequestrin 2 [Source:ZFIN;Acc:ZDB-GENE-010724-12]
50. ccng1 ENSDARG00000076667, ENSDARG00000110260 388.93 2915.49 cyclin G1 [Source:ZFIN;Acc:ZDB-GENE-020322-1]
51. ccni ENSDARG00000068214 388.93 2915.49 cyclin I [Source:ZFIN;Acc:ZDB-GENE-040426-2898]
52. ceacam1 ENSDARG00000041119, ENSDARG00000111374 388.93 2915.49 carcinoembryonic antigen-related cell adhesion molecule 1 [Source:ZFIN;Acc:ZDB-GENE-010724-14]
53. cfl1l ENSDARG00000012972 388.93 2915.49 cofilin 1 (non-muscle), like [Source:ZFIN;Acc:ZDB-GENE-040426-2770]
54. ckma ENSDARG00000035327, ENSDARG00000114671 388.93 2915.49 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
55. cnn3b ENSDARG00000029856 388.93 2915.49 calponin 3, acidic b [Source:ZFIN;Acc:ZDB-GENE-050522-263]
56. cul3a ENSDARG00000038967 388.93 2915.49 cullin 3a [Source:ZFIN;Acc:ZDB-GENE-030131-3376]
57. eef2b ENSDARG00000100371, ENSDARG00000109247 388.93 2915.49 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
58. efemp2a ENSDARG00000094324 388.93 2915.49 EGF containing fibulin extracellular matrix protein 2a [Source:ZFIN;Acc:ZDB-GENE-041212-8]
59. eif5 ENSDARG00000003681 388.93 2915.49 eukaryotic translation initiation factor 5 [Source:ZFIN;Acc:ZDB-GENE-030131-975]
60. eif5a ENSDARG00000017235 388.93 2915.49 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
61. fabp2 ENSDARG00000006427, ENSDARG00000110230 388.93 2915.49 fatty acid binding protein 2, intestinal [Source:ZFIN;Acc:ZDB-GENE-991019-5]
62. hif1al ENSDARG00000100826 388.93 2915.49 hypoxia inducible factor 1 subunit alpha, like [Source:ZFIN;Acc:ZDB-GENE-040426-1315]
63. hoxb9a ENSDARG00000056023 388.93 2915.49 homeobox B9a [Source:ZFIN;Acc:ZDB-GENE-990415-109]
64. icn ENSDARG00000009978 388.93 2915.49 ictacalcin [Source:ZFIN;Acc:ZDB-GENE-030131-8599]
65. khdrbs1b ENSDARG00000070475 388.93 2915.49 KH domain containing, RNA binding, signal transduction associated 1b [Source:ZFIN;Acc:ZDB-GENE-040426-2344]
66. lsm1 ENSDARG00000043177 388.93 2915.49 LSM1, U6 small nuclear RNA associated [Source:ZFIN;Acc:ZDB-GENE-040801-68]
67. ppp5c ENSDARG00000034313 388.93 2915.49 protein phosphatase 5, catalytic subunit [Source:ZFIN;Acc:ZDB-GENE-050327-75]
68. ptmab ENSDARG00000101766 388.93 2915.49 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
69. rpl17 ENSDARG00000057556 388.93 2915.49 ribosomal protein L17 [Source:ZFIN;Acc:ZDB-GENE-030131-8585]
70. rpl21 ENSDARG00000010516, ENSDARG00000110263 388.93 2915.49 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
71. rpl24 ENSDARG00000099104 388.93 2915.49 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
72. rpl27 ENSDARG00000015128 388.93 2915.49 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
73. rpl30 ENSDARG00000035871, ENSDARG00000109253 388.93 2915.49 ribosomal protein L30 [Source:ZFIN;Acc:ZDB-GENE-030131-8657]
74. rpl36a ENSDARG00000058105, ENSDARG00000112656 388.93 2915.49 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
75. rpl7 ENSDARG00000007320 388.93 2915.49 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
76. rps13 ENSDARG00000036298, ENSDARG00000112818 388.93 2915.49 ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]
77. rps2 ENSDARG00000077291 388.93 2915.49 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
78. rps3 ENSDARG00000103007 388.93 2915.49 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
79. rps6 ENSDARG00000019778 388.93 2915.49 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
80. rps7 ENSDARG00000042566 388.93 2915.49 ribosomal protein S7 [Source:ZFIN;Acc:ZDB-GENE-040426-1718]
81. rps9 ENSDARG00000011405, ENSDARG00000113248 388.93 2915.49 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
82. rpsa ENSDARG00000019181 388.93 2915.49 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
83. si:ch211-87l2.1 si:ch211-87l2.1 388.93 2915.49
84. tfa ENSDARG00000016771 388.93 2915.49 transferrin-a [Source:ZFIN;Acc:ZDB-GENE-980526-35]
85. tnnc2 ENSDARG00000070835, ENSDARG00000111155 388.93 2915.49 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
86. tnnt2c ENSDARG00000032242 388.93 2915.49 troponin T2c, cardiac [Source:ZFIN;Acc:ZDB-GENE-030520-1]
87. tpi1b ENSDARG00000040988, ENSDARG00000113061 388.93 2915.49 triosephosphate isomerase 1b [Source:ZFIN;Acc:ZDB-GENE-020416-4]
88. tpm2 ENSDARG00000104682 388.93 2915.49 tropomyosin 2 (beta) [Source:ZFIN;Acc:ZDB-GENE-040625-114]
89. zgc:153867 388.93 2915.49 zgc:153867, transcript variant X2
90. zgc:66286 zgc:66286 388.93 2915.49
91. AKAP2 AKAP2 194.46 1457.71
92. BX511245.1 ENSDARG00000096871 194.46 1457.71
93. CABZ01028296.1 CABZ01028296.1 194.46 1457.71
94. CABZ01034848.1 CABZ01034848.1 194.46 1457.71
95. CABZ01061717.1 CABZ01061717.1 194.46 1457.71
96. CU915738.1 CU915738.1 194.46 1457.71
97. FAM110D FAM110D 194.46 1457.71
98. FAM195A FAM195A 194.46 1457.71
99. FP245444.1 FP245444.1 194.46 1457.71
100. MAF1 ENSDARG00000013122 194.46 1457.71 MAF1 homolog, negative regulator of RNA polymerase III [Source:ZFIN;Acc:ZDB-GENE-040426-2788]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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