Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_trunk2, section s2.

Sample reads: 133,393. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 26940.23 201960.70
2. mt-co2 ENSDARG00000063908 1805.14 13532.45 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
3. mt-nd2 ENSDARG00000063899 1663.50 12470.63 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
4. tpma ENSDARG00000033683 1479.37 11090.28 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
5. krt4 ENSDARG00000017624, ENSDARG00000115790 1333.79 9998.92 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
6. mt-nd4 ENSDARG00000063917 1223.63 9173.09 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
7. mt-atp6 ENSDARG00000063911 1193.33 8945.94 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
8. mt-co3 ENSDARG00000063912 1170.90 8777.79 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
9. ckmb ENSDARG00000040565 1052.48 7890.04 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
10. mt-nd1 ENSDARG00000063895 1021.39 7656.97 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
11. si:dkey-151g10.6 si:dkey-151g10.6 857.33 6427.08
12. rpl10a ENSDARG00000042905, ENSDARG00000115649 784.93 5884.32 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
13. eef1a1l1 ENSDARG00000020850 768.80 5763.40 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
14. ppiaa ENSDARG00000009212 707.03 5300.34 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
15. mt-cyb ENSDARG00000063924 631.09 4731.04 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
16. ckma ENSDARG00000035327, ENSDARG00000114671 592.93 4444.97 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
17. actc1b ENSDARG00000099197 583.09 4371.20 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
18. mylz3 ENSDARG00000017441 573.26 4297.51 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
19. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 565.39 4238.51 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
20. actb2 ENSDARG00000037870 557.52 4179.52 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
21. tmsb4x ENSDARG00000077777 557.52 4179.52 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
22. rpl23 ENSDARG00000053457 522.50 3916.98 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
23. rpl8 ENSDARG00000014867 495.75 3716.45 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
24. rpl18a ENSDARG00000025073 494.17 3704.61 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
25. atp2a1 ENSDARG00000020574 481.97 3613.15 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
26. tnnc2 ENSDARG00000070835, ENSDARG00000111155 468.60 3512.92 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
27. zgc:112425 zgc:112425 461.52 3459.84
28. rpl21 ENSDARG00000010516, ENSDARG00000110263 449.71 3371.31 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
29. hspa8 ENSDARG00000068992, ENSDARG00000114726 438.30 3285.77 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
30. hmga1a ENSDARG00000028335 435.55 3265.15 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
31. zgc:66286 zgc:66286 431.61 3235.62
32. myhz1.3 ENSDARG00000067997 430.04 3223.85 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
33. hbbe3 ENSDARG00000038147, ENSDARG00000109344 420.99 3156.00 hemoglobin beta embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-980526-287]
34. myl10 ENSDARG00000062592 409.58 3070.47 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
35. rpl26 ENSDARG00000102317 400.53 3002.62 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
36. btf3 ENSDARG00000035400, ENSDARG00000116462 397.78 2982.01 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
37. rps23 ENSDARG00000021838 397.38 2979.01 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
38. rps14 ENSDARG00000036629 384.01 2878.78 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
39. acta1b ENSDARG00000055618 380.07 2849.24 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
40. rps27a ENSDARG00000032725, ENSDARG00000114059 377.32 2828.63 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
41. rpl9 ENSDARG00000037350, ENSDARG00000112384 368.66 2763.70 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
42. rpl18 ENSDARG00000029533 351.35 2633.94 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
43. eef2b ENSDARG00000100371, ENSDARG00000109247 348.99 2616.25 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
44. mt-co1 ENSDARG00000063905 344.27 2580.86 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
45. si:dkey-150i13.2 ENSDARG00000071052 344.27 2580.86 si:dkey-150i13.2 [Source:ZFIN;Acc:ZDB-GENE-090312-157]
46. actb1 ENSDARG00000037746, ENSDARG00000113649 343.48 2574.94 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
47. rps26l ENSDARG00000030408 336.01 2518.94 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
48. rpl36a ENSDARG00000058105, ENSDARG00000112656 334.04 2504.17 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
49. rpl11 ENSDARG00000043509 321.84 2412.71 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
50. apoc1l apoc1l 320.66 2403.87
51. hbae3 ENSDARG00000079305 315.55 2365.56 hemoglobin alpha embryonic-3 [Source:ZFIN;Acc:ZDB-GENE-990706-3]
52. rpl27 ENSDARG00000015128 310.82 2330.10 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
53. acta1a ENSDARG00000036371 307.68 2306.56 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
54. rpl36 ENSDARG00000100588 306.89 2300.64 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
55. rpl19 ENSDARG00000013307 301.78 2262.33 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
56. rpl7 ENSDARG00000007320 301.78 2262.33 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
57. eif5a ENSDARG00000017235 299.81 2247.56 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
58. rps20 ENSDARG00000036044 299.81 2247.56 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
59. rps2 ENSDARG00000077291 293.51 2200.33 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
60. zgc:161979 zgc:161979 292.33 2191.49
61. rps9 ENSDARG00000011405, ENSDARG00000113248 283.28 2123.64 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
62. rps6 ENSDARG00000019778 277.38 2079.41 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
63. aldoab ENSDARG00000034470 269.51 2020.41 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
64. rpsa ENSDARG00000019181 260.86 1955.57 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
65. rps15 ENSDARG00000070849, ENSDARG00000110979 257.71 1931.95 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
66. ttna ttna 256.92 1926.03
67. apoa1b ENSDARG00000101324 250.23 1875.88 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
68. rps15a ENSDARG00000010160 249.84 1872.96 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
69. tpm3 ENSDARG00000005162 245.91 1843.49 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
70. fabp3 ENSDARG00000023290 240.79 1805.11 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
71. apoa2 ENSDARG00000015866 238.04 1784.50 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
72. rps19 ENSDARG00000030602 237.25 1778.57 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
73. rpl6 ENSDARG00000058451 236.86 1775.65 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
74. pvalb2 ENSDARG00000002768, ENSDARG00000114085 235.68 1766.80 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
75. rps12 ENSDARG00000036875, ENSDARG00000115157 232.92 1746.11 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
76. rplp1 ENSDARG00000021864 230.56 1728.42 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
77. si:dkeyp-86f7.3 si:dkeyp-86f7.3 228.99 1716.65
78. ttnb ttnb 228.20 1710.73
79. rps3 ENSDARG00000103007 226.63 1698.96 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
80. rpl15 ENSDARG00000009285 225.05 1687.11 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
81. tnni2b.1 ENSDARG00000035958 225.05 1687.11 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
82. rpl5b ENSDARG00000015862, ENSDARG00000109661 223.87 1678.27 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
83. myl1 ENSDARG00000014196 219.15 1642.88 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
84. faua ENSDARG00000099022 217.58 1631.11 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
85. hsp90aa1.1 ENSDARG00000010478 216.79 1625.19 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
86. apoeb ENSDARG00000040295 215.61 1616.35 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
87. hsp90ab1 ENSDARG00000029150 212.07 1589.81 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
88. rpl24 ENSDARG00000099104 211.68 1586.88 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
89. rps5 ENSDARG00000043453 210.10 1575.04 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
90. zgc:161979_1 zgc:161979_1 204.59 1533.73
91. rps4x ENSDARG00000014690 203.81 1527.89 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
92. RPL29 ENSDARG00000077717 196.72 1474.74 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
93. rpl14 ENSDARG00000103433 195.54 1465.89 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
94. rpl35 ENSDARG00000018334 194.36 1457.04 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
95. smyhc1 ENSDARG00000099959, ENSDARG00000115916 193.97 1454.12 slow myosin heavy chain 1 [Source:ZFIN;Acc:ZDB-GENE-030131-271]
96. myhz2 ENSDARG00000012944 193.58 1451.20 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
97. rps29 ENSDARG00000041232 192.79 1445.27 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
98. cirbp cirbp 186.10 1395.12
99. rpl28 ENSDARG00000005791 184.92 1386.28 ribosomal protein L28 [Source:ZFIN;Acc:ZDB-GENE-040930-10]
100. tnni2a.4 ENSDARG00000029069 184.92 1386.28 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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