Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_trunk1, section s4.

Sample reads: 133,393. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 27656.41 207330.93
2. tpma ENSDARG00000033683 1495.76 11213.22 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. mt-nd2 ENSDARG00000063899 1454.58 10904.50 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
4. mt-co2 ENSDARG00000063908 1449.74 10868.22 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
5. ckmb ENSDARG00000040565 1143.32 8571.09 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
6. mt-co3 ENSDARG00000063912 1069.44 8017.24 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
7. krt4 ENSDARG00000017624, ENSDARG00000115790 1064.59 7980.88 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
8. mt-nd4 ENSDARG00000063917 1054.90 7908.24 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
9. si:dkey-151g10.6 si:dkey-151g10.6 1034.31 7753.88
10. mt-nd1 ENSDARG00000063895 789.66 5919.82 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
11. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 759.39 5692.89 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
12. ckma ENSDARG00000035327, ENSDARG00000114671 755.75 5665.61 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
13. actc1b ENSDARG00000099197 750.91 5629.32 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
14. ppiaa ENSDARG00000009212 738.80 5538.54 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
15. eef1a1l1 ENSDARG00000020850 724.26 5429.54 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
16. mt-atp6 ENSDARG00000063911 721.84 5411.40 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
17. rpl10a ENSDARG00000042905, ENSDARG00000115649 693.98 5202.54 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
18. mylz3 ENSDARG00000017441 651.59 4884.75 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
19. rpl26 ENSDARG00000102317 605.57 4539.76 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
20. rpl36a ENSDARG00000058105, ENSDARG00000112656 575.29 4312.76 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
21. zgc:112425 zgc:112425 563.18 4221.97
22. tnnc2 ENSDARG00000070835, ENSDARG00000111155 552.28 4140.26 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
23. rpl23 ENSDARG00000053457 536.54 4022.26 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
24. fabp3 ENSDARG00000023290 523.21 3922.33 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
25. rps14 ENSDARG00000036629 509.89 3822.48 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
26. rps27a ENSDARG00000032725, ENSDARG00000114059 508.68 3813.41 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
27. hmga1a ENSDARG00000028335 503.83 3777.05 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
28. rplp1 ENSDARG00000021864 500.20 3749.83 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
29. btf3 ENSDARG00000035400, ENSDARG00000116462 498.99 3740.76 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
30. atp2a1 ENSDARG00000020574 496.57 3722.62 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
31. rps23 ENSDARG00000021838 495.36 3713.55 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
32. rpl8 ENSDARG00000014867 491.72 3686.26 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
33. rpl21 ENSDARG00000010516, ENSDARG00000110263 489.30 3668.12 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
34. myhz1.3 ENSDARG00000067997 488.09 3659.05 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
35. rpl36 ENSDARG00000100588 471.13 3531.91 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
36. actb2 ENSDARG00000037870 469.92 3522.83 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
37. hspa8 ENSDARG00000068992, ENSDARG00000114726 468.71 3513.76 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
38. mt-cyb ENSDARG00000063924 460.23 3450.19 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
39. rpl18a ENSDARG00000025073 456.60 3422.98 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
40. rpl27 ENSDARG00000015128 455.39 3413.91 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
41. eef2b ENSDARG00000100371, ENSDARG00000109247 449.33 3368.48 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
42. rpl9 ENSDARG00000037350, ENSDARG00000112384 448.12 3359.41 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
43. tmsb4x ENSDARG00000077777 446.91 3350.34 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
44. rps9 ENSDARG00000011405, ENSDARG00000113248 415.42 3114.27 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
45. rpl11 ENSDARG00000043509 392.41 2941.77 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
46. rpl19 ENSDARG00000013307 391.20 2932.70 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
47. acta1b ENSDARG00000055618 388.78 2914.55 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
48. zgc:66286 zgc:66286 369.40 2769.27
49. myl10 ENSDARG00000062592 362.13 2714.77 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
50. rps15 ENSDARG00000070849, ENSDARG00000110979 362.13 2714.77 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
51. rps26l ENSDARG00000030408 359.71 2696.63 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
52. myl1 ENSDARG00000014196 354.86 2660.27 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
53. acta1a ENSDARG00000036371 341.54 2560.41 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
54. ptmab ENSDARG00000101766 335.49 2515.06 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
55. rps20 ENSDARG00000036044 335.49 2515.06 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
56. rpl7 ENSDARG00000007320 322.16 2415.13 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
57. rps12 ENSDARG00000036875, ENSDARG00000115157 319.74 2396.98 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
58. ttna ttna 318.53 2387.91
59. tnni2b.1 ENSDARG00000035958 316.11 2369.77 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
60. rps27.1 ENSDARG00000023298 305.21 2288.06 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
61. ttnb ttnb 300.36 2251.70
62. aldoab ENSDARG00000034470 295.52 2215.42 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
63. faua ENSDARG00000099022 294.31 2206.34 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
64. rps29 ENSDARG00000041232 290.67 2179.06 ribosomal protein S29 [Source:ZFIN;Acc:ZDB-GENE-040622-5]
65. rplp2 ENSDARG00000101406 278.56 2088.27 ribosomal protein, large P2 [Source:ZFIN;Acc:ZDB-GENE-031018-2]
66. rpl39 ENSDARG00000036316, ENSDARG00000117167 276.14 2070.13 ribosomal protein L39 [Source:ZFIN;Acc:ZDB-GENE-040625-51]
67. rpl18 ENSDARG00000029533 274.93 2061.06 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
68. si:dkeyp-86f7.3 si:dkeyp-86f7.3 273.72 2051.99
69. rpsa ENSDARG00000019181 272.51 2042.92 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
70. eif5a ENSDARG00000017235 271.30 2033.85 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
71. actb1 ENSDARG00000037746, ENSDARG00000113649 270.08 2024.70 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
72. rps15a ENSDARG00000010160 270.08 2024.70 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
73. AL954137.2 ENSDARG00000114408 268.87 2015.63
74. myhz2 ENSDARG00000012944 262.82 1970.27 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
75. rps2 ENSDARG00000077291 261.61 1961.20 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
76. rps19 ENSDARG00000030602 256.76 1924.84 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
77. rpl15 ENSDARG00000009285 253.13 1897.63 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
78. rpl14 ENSDARG00000103433 248.28 1861.27 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
79. mt-co1 ENSDARG00000063905 247.07 1852.20 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
80. rpl35a ENSDARG00000088030 245.86 1843.13 ribosomal protein L35a [Source:ZFIN;Acc:ZDB-GENE-040718-190]
81. rps5 ENSDARG00000043453 245.86 1843.13 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
82. hsp90ab1 ENSDARG00000029150 241.02 1806.85 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
83. rps24 ENSDARG00000039347 241.02 1806.85 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
84. hmgn2 ENSDARG00000099572 239.81 1797.78 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
85. rps4x ENSDARG00000014690 237.38 1779.56 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
86. rplp2l ENSDARG00000011201 233.75 1752.35 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
87. pvalb2 ENSDARG00000002768, ENSDARG00000114085 231.33 1734.20 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
88. rps3 ENSDARG00000103007 231.33 1734.20 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
89. tnnt3a ENSDARG00000030270 231.33 1734.20 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
90. RPL29 ENSDARG00000077717 230.12 1725.13 ribosomal protein L29 [Source:ZFIN;Acc:ZDB-GENE-040801-167]
91. rps7 ENSDARG00000042566 228.91 1716.06 ribosomal protein S7 [Source:ZFIN;Acc:ZDB-GENE-040426-1718]
92. AC024175.17 AC024175.17 227.69 1706.92
93. rpl24 ENSDARG00000099104 227.69 1706.92 ribosomal protein L24 [Source:ZFIN;Acc:ZDB-GENE-020419-25]
94. zgc:123194 zgc:123194 226.48 1697.85
95. rpl6 ENSDARG00000058451 224.06 1679.70 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
96. rps3a ENSDARG00000035692, ENSDARG00000114628, ENSDARG00000115378 224.06 1679.70 ribosomal protein S3A [Source:ZFIN;Acc:ZDB-GENE-030131-9184]
97. rpl5b ENSDARG00000015862, ENSDARG00000109661 221.64 1661.56 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
98. rps13 ENSDARG00000036298, ENSDARG00000112818 219.22 1643.42 ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]
99. mt-nd3 ENSDARG00000063914 218.01 1634.35 NADH dehydrogenase 3, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-9]
100. rplp0 ENSDARG00000051783 216.79 1625.20 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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