Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_trunk1, section s30.

Sample reads: 133,403. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 17391.09 130364.86
2. krt4 ENSDARG00000017624, ENSDARG00000115790 4029.64 30206.47 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. apoa1b ENSDARG00000101324 3181.30 23847.25 apolipoprotein A-Ib [Source:ZFIN;Acc:ZDB-GENE-050302-172]
4. apoa1a ENSDARG00000012076, ENSDARG00000110395 2332.95 17487.96 apolipoprotein A-Ia [Source:ZFIN;Acc:ZDB-GENE-990415-14]
5. zgc:161979 zgc:161979 2332.95 17487.96
6. apoeb ENSDARG00000040295 2120.86 15898.12 apolipoprotein Eb [Source:ZFIN;Acc:ZDB-GENE-980526-368]
7. mt-nd2 ENSDARG00000063899 1696.69 12718.51 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
8. mt-co2 ENSDARG00000063908 1484.61 11128.74 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
9. apoa2 ENSDARG00000015866 1272.52 9538.90 apolipoprotein A-II [Source:ZFIN;Acc:ZDB-GENE-030131-1046]
10. bhmt ENSDARG00000013430 1272.52 9538.90 betaine-homocysteine methyltransferase [Source:ZFIN;Acc:ZDB-GENE-030131-947]
11. fetub ENSDARG00000053973 1272.52 9538.90 fetuin B [Source:ZFIN;Acc:ZDB-GENE-050208-4]
12. mt-atp6 ENSDARG00000063911 1272.52 9538.90 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
13. zgc:161979_1 zgc:161979_1 1272.52 9538.90
14. actc1b ENSDARG00000099197 1060.43 7949.06 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
15. mt-nd1 ENSDARG00000063895 1060.43 7949.06 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
16. sf3b4 ENSDARG00000018574 1060.43 7949.06 splicing factor 3b, subunit 4 [Source:ZFIN;Acc:ZDB-GENE-020419-22]
17. actb2 ENSDARG00000037870 848.35 6359.29 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
18. eef1a1l1 ENSDARG00000020850 848.35 6359.29 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
19. rbp4 ENSDARG00000101199 848.35 6359.29 retinol binding protein 4, plasma [Source:ZFIN;Acc:ZDB-GENE-000210-19]
20. rpl8 ENSDARG00000014867 848.35 6359.29 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
21. rps27a ENSDARG00000032725, ENSDARG00000114059 848.35 6359.29 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
22. rps3a ENSDARG00000035692, ENSDARG00000114628, ENSDARG00000115378 848.35 6359.29 ribosomal protein S3A [Source:ZFIN;Acc:ZDB-GENE-030131-9184]
23. ubc ENSDARG00000102632 848.35 6359.29 ubiquitin C [Source:ZFIN;Acc:ZDB-GENE-061110-88]
24. zgc:92533 zgc:92533 848.35 6359.29
25. apoa4 apoa4 636.26 4769.45
26. apoc1l apoc1l 636.26 4769.45
27. arpc2 ENSDARG00000075989 636.26 4769.45 actin related protein 2/3 complex, subunit 2 [Source:ZFIN;Acc:ZDB-GENE-030131-5276]
28. ckma ENSDARG00000035327, ENSDARG00000114671 636.26 4769.45 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
29. ckmb ENSDARG00000040565 636.26 4769.45 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
30. ctsla ENSDARG00000007836 636.26 4769.45 cathepsin La [Source:ZFIN;Acc:ZDB-GENE-030131-106]
31. fbxo28 ENSDARG00000027159 636.26 4769.45 F-box protein 28 [Source:ZFIN;Acc:ZDB-GENE-030131-4665]
32. fga ENSDARG00000020741 636.26 4769.45 fibrinogen alpha chain [Source:ZFIN;Acc:ZDB-GENE-031010-21]
33. gamt ENSDARG00000070844, ENSDARG00000109945 636.26 4769.45 guanidinoacetate N-methyltransferase [Source:ZFIN;Acc:ZDB-GENE-051030-97]
34. rpl18a ENSDARG00000025073 636.26 4769.45 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
35. si:dkey-151g10.6 si:dkey-151g10.6 636.26 4769.45
36. tnnc2 ENSDARG00000070835, ENSDARG00000111155 636.26 4769.45 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
37. tpma ENSDARG00000033683 636.26 4769.45 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
38. zgc:100919 zgc:100919 636.26 4769.45
39. AL954137.2 ENSDARG00000114408 424.17 3179.61
40. APOA4 APOA4 424.17 3179.61
41. BRK1 ENSDARG00000041974 424.17 3179.61 BRICK1, SCAR/WAVE actin-nucleating complex subunit [Source:ZFIN;Acc:ZDB-GENE-040625-77]
42. CDIP1 ENSDARG00000076118 424.17 3179.61 cell death-inducing p53 target 1 [Source:ZFIN;Acc:ZDB-GENE-070720-18]
43. HAUS8 HAUS8 424.17 3179.61
44. UBC ENSDARG00000102632 424.17 3179.61 ubiquitin C [Source:ZFIN;Acc:ZDB-GENE-061110-88]
45. acta1a ENSDARG00000036371 424.17 3179.61 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
46. aldh9a1a.1 ENSDARG00000069100, ENSDARG00000114905 424.17 3179.61 aldehyde dehydrogenase 9 family, member A1a, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-030131-1257]
47. apobb apobb 424.17 3179.61
48. btf3 ENSDARG00000035400, ENSDARG00000116462 424.17 3179.61 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
49. epdl2 ENSDARG00000055539 424.17 3179.61 ependymin-like 2 [Source:ZFIN;Acc:ZDB-GENE-091204-250]
50. fuca1 fuca1 424.17 3179.61
51. hbae1_1 424.17 3179.61 hemoglobin, alpha embryonic 1
52. hmga1a ENSDARG00000028335 424.17 3179.61 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
53. hmgcrb ENSDARG00000105206 424.17 3179.61 3-hydroxy-3-methylglutaryl-CoA reductase b [Source:ZFIN;Acc:ZDB-GENE-051108-1]
54. hspe1 ENSDARG00000056167 424.17 3179.61 heat shock 10 protein 1 [Source:ZFIN;Acc:ZDB-GENE-000906-2]
55. krt8 ENSDARG00000058358, ENSDARG00000109279 424.17 3179.61 keratin 8 [Source:ZFIN;Acc:ZDB-GENE-030411-5]
56. lamc1 ENSDARG00000036279 424.17 3179.61 laminin, gamma 1 [Source:ZFIN;Acc:ZDB-GENE-021226-3]
57. ldhba ENSDARG00000019644 424.17 3179.61 lactate dehydrogenase Ba [Source:ZFIN;Acc:ZDB-GENE-991026-6]
58. marcksb ENSDARG00000008803 424.17 3179.61 myristoylated alanine-rich protein kinase C substrate b [Source:ZFIN;Acc:ZDB-GENE-030131-1921]
59. mt-co1 ENSDARG00000063905 424.17 3179.61 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
60. mt-co3 ENSDARG00000063912 424.17 3179.61 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
61. myl10 ENSDARG00000062592 424.17 3179.61 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
62. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 424.17 3179.61 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
63. mylpfb ENSDARG00000002589 424.17 3179.61 myosin light chain, phosphorylatable, fast skeletal muscle b [Source:ZFIN;Acc:ZDB-GENE-040912-115]
64. mylz3 ENSDARG00000017441 424.17 3179.61 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
65. ppapdc1b ppapdc1b 424.17 3179.61
66. ptgs1 ENSDARG00000052148 424.17 3179.61 prostaglandin-endoperoxide synthase 1 [Source:ZFIN;Acc:ZDB-GENE-020530-1]
67. pvalb1 ENSDARG00000037789 424.17 3179.61 parvalbumin 1 [Source:ZFIN;Acc:ZDB-GENE-040625-57]
68. rad50 ENSDARG00000038917 424.17 3179.61 RAD50 homolog, double strand break repair protein [Source:ZFIN;Acc:ZDB-GENE-050506-110]
69. rpl5b ENSDARG00000015862, ENSDARG00000109661 424.17 3179.61 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
70. rpl9 ENSDARG00000037350, ENSDARG00000112384 424.17 3179.61 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
71. rps15 ENSDARG00000070849, ENSDARG00000110979 424.17 3179.61 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
72. rps18 ENSDARG00000100392 424.17 3179.61 ribosomal protein S18 [Source:ZFIN;Acc:ZDB-GENE-020419-20]
73. si:dkey-199f5.8 ENSDARG00000018853 424.17 3179.61 si:dkey-199f5.8 [Source:ZFIN;Acc:ZDB-GENE-030131-4733]
74. srp72 ENSDARG00000014139 424.17 3179.61 signal recognition particle 72 [Source:ZFIN;Acc:ZDB-GENE-030131-5546]
75. suclg1 ENSDARG00000052712 424.17 3179.61 succinate-CoA ligase, alpha subunit [Source:ZFIN;Acc:ZDB-GENE-040912-101]
76. tmeff1b ENSDARG00000056740 424.17 3179.61 transmembrane protein with EGF-like and two follistatin-like domains 1b [Source:ZFIN;Acc:ZDB-GENE-050706-143]
77. tmsb4x ENSDARG00000077777 424.17 3179.61 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
78. tnni2b.1 ENSDARG00000035958 424.17 3179.61 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
79. tpm3 ENSDARG00000005162 424.17 3179.61 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
80. txnipa ENSDARG00000036107 424.17 3179.61 thioredoxin interacting protein a [Source:ZFIN;Acc:ZDB-GENE-030804-10]
81. ywhaz ENSDARG00000032575 424.17 3179.61 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:ZFIN;Acc:ZDB-GENE-030131-8554]
82. zgc:112425 zgc:112425 424.17 3179.61
83. zgc:153129 zgc:153129 424.17 3179.61
84. ABHD12B ABHD12B 212.09 1589.84
85. APOB APOB 212.09 1589.84
86. BX511252.1 BX511252.1 212.09 1589.84
87. C17H14orf166 C17H14orf166 212.09 1589.84
88. C18H15orf39 C18H15orf39 212.09 1589.84
89. CABZ01111496.1 ENSDARG00000003041 212.09 1589.84 E3 ubiquitin-protein ligase pellino homolog 2-like [Source:NCBI gene;Acc:100334245]
90. CT955984.1 ENSDARG00000113577 212.09 1589.84
91. FAM210B ENSDARG00000052638 212.09 1589.84 family with sequence similarity 210, member B [Source:ZFIN;Acc:ZDB-GENE-050913-122]
92. FP326665.1 FP326665.1 212.09 1589.84
93. HRC ENSDARG00000045947 212.09 1589.84 histidine rich calcium binding protein [Source:ZFIN;Acc:ZDB-GENE-041008-189]
94. IDH2 ENSDARG00000003795 212.09 1589.84 isocitrate dehydrogenase 2 (NADP+), mitochondrial [Source:ZFIN;Acc:ZDB-GENE-031118-95]
95. MRPL47 ENSDARG00000075743, ENSDARG00000114962 212.09 1589.84 mitochondrial ribosomal protein L47 [Source:ZFIN;Acc:ZDB-GENE-030219-177]
96. NUAK1_1 NUAK1_1 212.09 1589.84
97. PPIL3 ENSDARG00000033370 212.09 1589.84 peptidylprolyl isomerase (cyclophilin)-like 3 [Source:ZFIN;Acc:ZDB-GENE-040625-159]
98. SLC22A23 ENSDARG00000078856 212.09 1589.84 solute carrier family 22, member 23 [Source:ZFIN;Acc:ZDB-GENE-030131-3564]
99. SNRPG ENSDARG00000099667 212.09 1589.84 small nuclear ribonucleoprotein polypeptide G [Source:ZFIN;Acc:ZDB-GENE-040912-105]
100. SYCE3 SYCE3 212.09 1589.84
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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