Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_trunk1, section s3.

Sample reads: 133,396. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 22868.72 171435.47
2. tpma ENSDARG00000033683 1727.54 12950.51 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
3. mt-nd2 ENSDARG00000063899 1508.07 11305.25 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
4. krt4 ENSDARG00000017624, ENSDARG00000115790 1351.79 10133.70 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
5. ckmb ENSDARG00000040565 1276.75 9571.16 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
6. mt-co2 ENSDARG00000063908 1265.47 9486.60 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
7. mt-atp6 ENSDARG00000063911 1183.66 8873.31 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
8. mt-co3 ENSDARG00000063912 1092.83 8192.41 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
9. mt-nd4 ENSDARG00000063917 1080.42 8099.37 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
10. actc1b ENSDARG00000099197 846.84 6348.34 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
11. ckma ENSDARG00000035327, ENSDARG00000114671 840.07 6297.59 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
12. mt-nd1 ENSDARG00000063895 824.84 6183.42 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
13. eef1a1l1 ENSDARG00000020850 774.63 5807.02 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
14. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 771.24 5781.60 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
15. zgc:112425 zgc:112425 728.36 5460.15
16. hmga1a ENSDARG00000028335 727.24 5451.76 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
17. si:dkey-151g10.6 si:dkey-151g10.6 712.57 5341.78
18. atp2a1 ENSDARG00000020574 675.90 5066.89 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
19. ppiaa ENSDARG00000009212 667.43 5003.39 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
20. mylz3 ENSDARG00000017441 643.74 4825.80 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
21. rpl23 ENSDARG00000053457 589.57 4419.71 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
22. rpl10a ENSDARG00000042905, ENSDARG00000115649 584.50 4381.71 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
23. mt-cyb ENSDARG00000063924 552.34 4140.62 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
24. myhz1.3 ENSDARG00000067997 538.80 4039.12 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
25. tnnc2 ENSDARG00000070835, ENSDARG00000111155 532.59 3992.56 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
26. rpl18a ENSDARG00000025073 513.97 3852.98 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
27. rpl8 ENSDARG00000014867 510.59 3827.64 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
28. fabp3 ENSDARG00000023290 501.56 3759.95 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
29. hspa8 ENSDARG00000068992, ENSDARG00000114726 488.02 3658.44 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
30. acta1b ENSDARG00000055618 485.76 3641.50 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
31. btf3 ENSDARG00000035400, ENSDARG00000116462 485.76 3641.50 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
32. rpl21 ENSDARG00000010516, ENSDARG00000110263 476.74 3573.88 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
33. rpl26 ENSDARG00000102317 446.27 3345.47 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
34. actb2 ENSDARG00000037870 444.01 3328.52 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
35. eef2b ENSDARG00000100371, ENSDARG00000109247 425.40 3189.01 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
36. rpl9 ENSDARG00000037350, ENSDARG00000112384 407.34 3053.63 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
37. tmsb4x ENSDARG00000077777 402.26 3015.54 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
38. ptmab ENSDARG00000101766 397.19 2977.54 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
39. zgc:66286 zgc:66286 387.60 2905.65
40. rpl36 ENSDARG00000100588 379.70 2846.42 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
41. rpl36a ENSDARG00000058105, ENSDARG00000112656 371.80 2787.20 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
42. rps23 ENSDARG00000021838 361.08 2706.84 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
43. rps14 ENSDARG00000036629 350.92 2630.67 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
44. rps27a ENSDARG00000032725, ENSDARG00000114059 349.23 2618.00 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
45. acta1a ENSDARG00000036371 345.28 2588.39 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
46. id1 ENSDARG00000040764 322.71 2419.20 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
47. pvalb2 ENSDARG00000002768, ENSDARG00000114085 322.71 2419.20 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
48. rpl27 ENSDARG00000015128 320.46 2402.33 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
49. rplp1 ENSDARG00000021864 318.77 2389.66 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
50. rps2 ENSDARG00000077291 318.77 2389.66 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
51. tnni2b.1 ENSDARG00000035958 314.82 2360.05 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
52. AL954137.2 ENSDARG00000114408 308.61 2313.50
53. rpl18 ENSDARG00000029533 305.79 2292.36 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
54. ttna ttna 300.71 2254.27
55. rps26l ENSDARG00000030408 296.76 2224.66 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
56. rpl19 ENSDARG00000013307 295.07 2211.99 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
57. actb1 ENSDARG00000037746, ENSDARG00000113649 292.81 2195.05 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
58. myl10 ENSDARG00000062592 291.68 2186.58 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
59. rps9 ENSDARG00000011405, ENSDARG00000113248 288.30 2161.24 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
60. eif5a ENSDARG00000017235 285.48 2140.10 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
61. myl1 ENSDARG00000014196 284.35 2131.63 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
62. pcna ENSDARG00000054155 282.66 2118.96 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
63. rpl7 ENSDARG00000007320 277.58 2080.88 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
64. rps6 ENSDARG00000019778 269.68 2021.66 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
65. aldoab ENSDARG00000034470 267.42 2004.72 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
66. rpl11 ENSDARG00000043509 264.60 1983.58 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
67. rps15 ENSDARG00000070849, ENSDARG00000110979 258.40 1937.10 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
68. cirbp cirbp 257.27 1928.63
69. tnnt3a ENSDARG00000030270 257.27 1928.63 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
70. zgc:123194 zgc:123194 255.58 1915.96
71. rps20 ENSDARG00000036044 251.63 1886.35 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
72. mt-co1 ENSDARG00000063905 250.50 1877.87 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
73. hsp90ab1 ENSDARG00000029150 249.93 1873.60 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
74. tnni2a.4 ENSDARG00000029069 248.81 1865.21 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
75. rpsa ENSDARG00000019181 247.68 1856.73 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
76. rps4x ENSDARG00000014690 242.60 1818.65 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
77. ttnb ttnb 239.78 1797.51
78. rps12 ENSDARG00000036875, ENSDARG00000115157 239.21 1793.24 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
79. rps27.1 ENSDARG00000023298 235.27 1763.70 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
80. rpl15 ENSDARG00000009285 233.57 1750.96 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
81. rplp0 ENSDARG00000051783 229.06 1717.15 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
82. tpm3 ENSDARG00000005162 226.80 1700.21 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
83. rpl35 ENSDARG00000018334 223.42 1674.87 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
84. rpl5b ENSDARG00000015862, ENSDARG00000109661 222.85 1670.60 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
85. si:dkeyp-86f7.3 si:dkeyp-86f7.3 222.85 1670.60
86. rps15a ENSDARG00000010160 218.90 1640.98 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
87. faua ENSDARG00000099022 218.34 1636.79 Finkel-Biskis-Reilly murine sarcoma virus (FBR-MuSV) ubiquitously expressed a [Source:ZFIN;Acc:ZDB-GENE-040426-1700]
88. hsp90aa1.1 ENSDARG00000010478 216.65 1624.12 heat shock protein 90, alpha (cytosolic), class A member 1, tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-990415-94]
89. hmgn2 ENSDARG00000099572 214.39 1607.18 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
90. rps5 ENSDARG00000043453 211.57 1586.04 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
91. myhz2 ENSDARG00000012944 210.44 1577.56 myosin, heavy polypeptide 2, fast muscle specific [Source:ZFIN;Acc:ZDB-GENE-020604-1]
92. ATP5B 204.80 1535.28 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
93. rplp2l ENSDARG00000011201 203.67 1526.81 ribosomal protein, large P2, like [Source:ZFIN;Acc:ZDB-GENE-070327-2]
94. rps3 ENSDARG00000103007 201.98 1514.14 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
95. rps24 ENSDARG00000039347 200.29 1501.47 ribosomal protein S24 [Source:ZFIN;Acc:ZDB-GENE-040109-5]
96. rpl6 ENSDARG00000058451 198.03 1484.53 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
97. khdrbs1a ENSDARG00000052856 194.64 1459.12 KH domain containing, RNA binding, signal transduction associated 1a [Source:ZFIN;Acc:ZDB-GENE-000210-25]
98. rpl14 ENSDARG00000103433 192.95 1446.45 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
99. nme2b.2 ENSDARG00000099420 192.39 1442.25 NME/NM23 nucleoside diphosphate kinase 2b, tandem duplicate 2 [Source:ZFIN;Acc:ZDB-GENE-000210-33]
100. cfl1 ENSDARG00000021124 190.13 1425.31 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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