Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Zebrafish_28hpf_trunk1, section s2.

Sample reads: 133,396. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. AC024175.4 AC024175.4 21870.54 163951.67
2. krt4 ENSDARG00000017624, ENSDARG00000115790 1918.47 14381.74 keratin 4 [Source:ZFIN;Acc:ZDB-GENE-000607-83]
3. tpma ENSDARG00000033683 1356.85 10171.57 alpha-tropomyosin [Source:ZFIN;Acc:ZDB-GENE-990415-269]
4. mt-nd2 ENSDARG00000063899 1342.93 10067.22 NADH dehydrogenase 2, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-8]
5. mt-co2 ENSDARG00000063908 1315.08 9858.45 cytochrome c oxidase II, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-15]
6. mt-nd4 ENSDARG00000063917 1084.55 8130.29 NADH dehydrogenase 4, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-10]
7. ckmb ENSDARG00000040565 901.22 6755.96 creatine kinase, muscle b [Source:ZFIN;Acc:ZDB-GENE-040426-2128]
8. mt-co3 ENSDARG00000063912 893.48 6697.94 cytochrome c oxidase III, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-16]
9. actc1b ENSDARG00000099197 891.16 6680.55 actin, alpha, cardiac muscle 1b [Source:ZFIN;Acc:ZDB-GENE-000322-1]
10. eef1a1l1 ENSDARG00000020850 874.14 6552.96 eukaryotic translation elongation factor 1 alpha 1, like 1 [Source:ZFIN;Acc:ZDB-GENE-990415-52]
11. mt-atp6 ENSDARG00000063911 815.35 6112.24 ATP synthase 6, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-18]
12. mt-nd1 ENSDARG00000063895 794.46 5955.64 NADH dehydrogenase 1, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-7]
13. ckma ENSDARG00000035327, ENSDARG00000114671 782.86 5868.68 creatine kinase, muscle a [Source:ZFIN;Acc:ZDB-GENE-980526-109]
14. actb2 ENSDARG00000037870 758.88 5688.92 actin, beta 2 [Source:ZFIN;Acc:ZDB-GENE-000329-3]
15. hmga1a ENSDARG00000028335 739.54 5543.93 high mobility group AT-hook 1a [Source:ZFIN;Acc:ZDB-GENE-010502-1]
16. si:dkey-151g10.6 si:dkey-151g10.6 720.97 5404.72
17. rpl10a ENSDARG00000042905, ENSDARG00000115649 644.39 4830.65 ribosomal protein L10a [Source:ZFIN;Acc:ZDB-GENE-030131-2025]
18. ppiaa ENSDARG00000009212 608.80 4563.85 peptidylprolyl isomerase Aa (cyclophilin A) [Source:ZFIN;Acc:ZDB-GENE-030131-8556]
19. tmsb4x ENSDARG00000077777 601.84 4511.67 thymosin beta 4 X-linked [Source:ZFIN;Acc:ZDB-GENE-030131-8304]
20. mylpfa ENSDARG00000053254, ENSDARG00000112448, ENSDARG00000113256 590.24 4424.71 myosin light chain, phosphorylatable, fast skeletal muscle a [Source:ZFIN;Acc:ZDB-GENE-990712-15]
21. atp2a1 ENSDARG00000020574 587.14 4401.47 ATPase sarcoplasmic/endoplasmic reticulum Ca2+ transporting 1 [Source:ZFIN;Acc:ZDB-GENE-020905-1]
22. zgc:112425 zgc:112425 563.94 4227.55
23. eef2b ENSDARG00000100371, ENSDARG00000109247 549.24 4117.36 eukaryotic translation elongation factor 2b [Source:ZFIN;Acc:ZDB-GENE-030131-5128]
24. mylz3 ENSDARG00000017441 549.24 4117.36 myosin, light polypeptide 3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-000322-6]
25. mt-cyb ENSDARG00000063924 510.56 3827.39 cytochrome b, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-17]
26. hspa8 ENSDARG00000068992, ENSDARG00000114726 483.48 3624.39 heat shock protein 8 [Source:ZFIN;Acc:ZDB-GENE-990415-92]
27. rpl21 ENSDARG00000010516, ENSDARG00000110263 461.82 3462.02 ribosomal protein L21 [Source:ZFIN;Acc:ZDB-GENE-030131-8512]
28. tnnc2 ENSDARG00000070835, ENSDARG00000111155 461.82 3462.02 troponin C type 2 (fast) [Source:ZFIN;Acc:ZDB-GENE-000322-2]
29. rpl8 ENSDARG00000014867 459.50 3444.62 ribosomal protein L8 [Source:ZFIN;Acc:ZDB-GENE-040426-1670]
30. rpl23 ENSDARG00000053457 452.54 3392.45 ribosomal protein L23 [Source:ZFIN;Acc:ZDB-GENE-030131-8756]
31. rpl18a ENSDARG00000025073 444.81 3334.50 ribosomal protein L18a [Source:ZFIN;Acc:ZDB-GENE-040426-1071]
32. fabp3 ENSDARG00000023290 439.39 3293.87 fatty acid binding protein 3, muscle and heart [Source:ZFIN;Acc:ZDB-GENE-020318-2]
33. actb1 ENSDARG00000037746, ENSDARG00000113649 420.05 3148.89 actin, beta 1 [Source:ZFIN;Acc:ZDB-GENE-000329-1]
34. rps14 ENSDARG00000036629 416.96 3125.72 ribosomal protein S14 [Source:ZFIN;Acc:ZDB-GENE-030131-8631]
35. rps26l ENSDARG00000030408 405.35 3038.69 ribosomal protein S26, like [Source:ZFIN;Acc:ZDB-GENE-040426-1706]
36. rpl36a ENSDARG00000058105, ENSDARG00000112656 386.01 2893.71 ribosomal protein L36A [Source:ZFIN;Acc:ZDB-GENE-020423-1]
37. btf3 ENSDARG00000035400, ENSDARG00000116462 384.47 2882.16 basic transcription factor 3 [Source:ZFIN;Acc:ZDB-GENE-030131-8731]
38. rpl26 ENSDARG00000102317 383.69 2876.32 ribosomal protein L26 [Source:ZFIN;Acc:ZDB-GENE-040426-2117]
39. rpl36 ENSDARG00000100588 380.60 2853.15 ribosomal protein L36 [Source:ZFIN;Acc:ZDB-GENE-040622-2]
40. zgc:66286 zgc:66286 371.32 2783.59
41. acta1b ENSDARG00000055618 369.77 2771.97 actin, alpha 1b, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-030131-55]
42. rps27a ENSDARG00000032725, ENSDARG00000114059 369.77 2771.97 ribosomal protein S27a [Source:ZFIN;Acc:ZDB-GENE-030131-10018]
43. rps23 ENSDARG00000021838 365.90 2742.96 ribosomal protein S23 [Source:ZFIN;Acc:ZDB-GENE-080220-50]
44. rplp1 ENSDARG00000021864 353.52 2650.15 ribosomal protein, large, P1 [Source:ZFIN;Acc:ZDB-GENE-030131-8663]
45. ptmab ENSDARG00000101766 349.66 2621.21 prothymosin alpha b [Source:ZFIN;Acc:ZDB-GENE-030131-8681]
46. mt-co1 ENSDARG00000063905 337.28 2528.41 cytochrome c oxidase I, mitochondrial [Source:ZFIN;Acc:ZDB-GENE-011205-14]
47. myhz1.3 ENSDARG00000067997 337.28 2528.41 myosin, heavy polypeptide 1.3, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-070705-74]
48. rpl9 ENSDARG00000037350, ENSDARG00000112384 331.86 2487.78 ribosomal protein L9 [Source:ZFIN;Acc:ZDB-GENE-030131-8646]
49. pvalb2 ENSDARG00000002768, ENSDARG00000114085 308.66 2313.86 parvalbumin 2 [Source:ZFIN;Acc:ZDB-GENE-000322-4]
50. rpl27 ENSDARG00000015128 303.24 2273.23 ribosomal protein L27 [Source:ZFIN;Acc:ZDB-GENE-030131-4343]
51. rpl7 ENSDARG00000007320 301.69 2261.61 ribosomal protein L7 [Source:ZFIN;Acc:ZDB-GENE-030131-8654]
52. rpl19 ENSDARG00000013307 299.37 2244.22 ribosomal protein L19 [Source:ZFIN;Acc:ZDB-GENE-040426-2290]
53. myl10 ENSDARG00000062592 291.64 2186.27 myosin, light chain 10, regulatory [Source:ZFIN;Acc:ZDB-GENE-050417-421]
54. hsp90ab1 ENSDARG00000029150 288.54 2163.03 heat shock protein 90, alpha (cytosolic), class B member 1 [Source:ZFIN;Acc:ZDB-GENE-990415-95]
55. aldoab ENSDARG00000034470 287.00 2151.48 aldolase a, fructose-bisphosphate, b [Source:ZFIN;Acc:ZDB-GENE-040426-2299]
56. rps2 ENSDARG00000077291 286.22 2145.64 ribosomal protein S2 [Source:ZFIN;Acc:ZDB-GENE-040426-2454]
57. gch2 ENSDARG00000099101 285.45 2139.87 GTP cyclohydrolase 2 [Source:ZFIN;Acc:ZDB-GENE-001205-3]
58. acta1a ENSDARG00000036371 283.90 2128.25 actin, alpha 1a, skeletal muscle [Source:ZFIN;Acc:ZDB-GENE-050417-267]
59. rpl18 ENSDARG00000029533 283.13 2122.47 ribosomal protein L18 [Source:ZFIN;Acc:ZDB-GENE-040801-165]
60. ttna ttna 273.85 2052.91
61. cirbp cirbp 272.30 2041.29
62. rpl11 ENSDARG00000043509 267.66 2006.50 ribosomal protein L11 [Source:ZFIN;Acc:ZDB-GENE-040625-147]
63. id1 ENSDARG00000040764 265.34 1989.11 inhibitor of DNA binding 1 [Source:ZFIN;Acc:ZDB-GENE-990415-96]
64. eif5a ENSDARG00000017235 262.24 1965.87 eukaryotic translation initiation factor 5A [Source:ZFIN;Acc:ZDB-GENE-040426-2229]
65. rps9 ENSDARG00000011405, ENSDARG00000113248 261.47 1960.10 ribosomal protein S9 [Source:ZFIN;Acc:ZDB-GENE-010724-15]
66. rps12 ENSDARG00000036875, ENSDARG00000115157 259.92 1948.48 ribosomal protein S12 [Source:ZFIN;Acc:ZDB-GENE-030131-8951]
67. rps15 ENSDARG00000070849, ENSDARG00000110979 250.64 1878.91 ribosomal protein S15 [Source:ZFIN;Acc:ZDB-GENE-030131-9092]
68. si:dkeyp-86f7.3 si:dkeyp-86f7.3 250.64 1878.91
69. rps20 ENSDARG00000036044 249.87 1873.14 ribosomal protein S20 [Source:ZFIN;Acc:ZDB-GENE-040426-2284]
70. rps6 ENSDARG00000019778 249.09 1867.29 ribosomal protein S6 [Source:ZFIN;Acc:ZDB-GENE-040801-8]
71. zgc:123194 zgc:123194 248.32 1861.52
72. rpl15 ENSDARG00000009285 242.13 1815.12 ribosomal protein L15 [Source:ZFIN;Acc:ZDB-GENE-040801-183]
73. myl1 ENSDARG00000014196 233.62 1751.32 myosin, light chain 1, alkali; skeletal, fast [Source:ZFIN;Acc:ZDB-GENE-030131-8109]
74. tnnt3a ENSDARG00000030270 233.62 1751.32 troponin T type 3a (skeletal, fast) [Source:ZFIN;Acc:ZDB-GENE-000322-3]
75. tnni2b.1 ENSDARG00000035958 232.07 1739.70 troponin I type 2b (skeletal, fast), tandem duplicate 1 [Source:ZFIN;Acc:ZDB-GENE-050417-49]
76. rpsa ENSDARG00000019181 231.30 1733.93 ribosomal protein SA [Source:ZFIN;Acc:ZDB-GENE-040426-811]
77. ttnb ttnb 229.75 1722.31
78. rps15a ENSDARG00000010160 228.98 1716.54 ribosomal protein S15a [Source:ZFIN;Acc:ZDB-GENE-030131-8708]
79. rpl5b ENSDARG00000015862, ENSDARG00000109661 227.43 1704.92 ribosomal protein L5b [Source:ZFIN;Acc:ZDB-GENE-040625-93]
80. rpl6 ENSDARG00000058451 224.34 1681.76 ribosomal protein L6 [Source:ZFIN;Acc:ZDB-GENE-030131-8671]
81. ATP5B 222.79 1670.14 ATP synthase, H+ transporting, mitochondrial F1 complex, beta polypeptide
82. pcna ENSDARG00000054155 222.79 1670.14 proliferating cell nuclear antigen [Source:ZFIN;Acc:ZDB-GENE-000210-8]
83. rps27.1 ENSDARG00000023298 221.24 1658.52 ribosomal protein S27, isoform 1 [Source:ZFIN;Acc:ZDB-GENE-050522-549]
84. tpm3 ENSDARG00000005162 219.70 1646.97 tropomyosin 3 [Source:ZFIN;Acc:ZDB-GENE-030826-16]
85. rps5 ENSDARG00000043453 215.05 1612.11 ribosomal protein S5 [Source:ZFIN;Acc:ZDB-GENE-020419-12]
86. rps4x ENSDARG00000014690 214.28 1606.34 ribosomal protein S4 X-linked [Source:ZFIN;Acc:ZDB-GENE-040927-19]
87. AL954137.2 ENSDARG00000114408 213.51 1600.57
88. rplp0 ENSDARG00000051783 213.51 1600.57 ribosomal protein, large, P0 [Source:ZFIN;Acc:ZDB-GENE-000629-1]
89. pabpc1a ENSDARG00000017219 210.41 1577.33 poly(A) binding protein, cytoplasmic 1a [Source:ZFIN;Acc:ZDB-GENE-030131-3238]
90. rps19 ENSDARG00000030602 210.41 1577.33 ribosomal protein S19 [Source:ZFIN;Acc:ZDB-GENE-040426-1716]
91. rpl35 ENSDARG00000018334 206.54 1548.32 ribosomal protein L35 [Source:ZFIN;Acc:ZDB-GENE-020419-2]
92. cfl1 ENSDARG00000021124 199.58 1496.14 cofilin 1 [Source:ZFIN;Acc:ZDB-GENE-030131-215]
93. hnrnpa0l ENSDARG00000036161, ENSDARG00000076380, ENSDARG00000114889 199.58 1496.14 heterogeneous nuclear ribonucleoprotein A0, like [Source:ZFIN;Acc:ZDB-GENE-030131-618]
94. hmgn2 ENSDARG00000099572 194.94 1461.36 high mobility group nucleosomal binding domain 2 [Source:ZFIN;Acc:ZDB-GENE-051030-81]
95. tnni2a.4 ENSDARG00000029069 194.17 1455.59 troponin I type 2a (skeletal, fast), tandem duplicate 4 [Source:ZFIN;Acc:ZDB-GENE-040625-119]
96. rps10 ENSDARG00000034897 191.85 1438.20 ribosomal protein S10 [Source:ZFIN;Acc:ZDB-GENE-040426-1481]
97. rps13 ENSDARG00000036298, ENSDARG00000112818 191.07 1432.35 ribosomal protein S13 [Source:ZFIN;Acc:ZDB-GENE-040625-52]
98. AC024175.17 AC024175.17 189.53 1420.80
99. rpl14 ENSDARG00000103433 187.98 1409.18 ribosomal protein L14 [Source:ZFIN;Acc:ZDB-GENE-030131-2085]
100. rps3 ENSDARG00000103007 187.21 1403.41 ribosomal protein S3 [Source:ZFIN;Acc:ZDB-GENE-030131-8494]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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