Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s9.

Sample reads: 96,256. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3939.56 40927.83 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 2889.38 30017.58 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 1981.73 20588.06 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 1784.02 18534.07 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 1698.50 17645.61 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 1427.22 14827.30 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Rnr2 ENSMUSG00000064339 1384.91 14387.74 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
8. mt-Co1 ENSMUSG00000064351 1279.16 13289.11 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. Eef1a1 ENSMUSG00000037742 773.38 8034.59 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
10. mt-Nd2 ENSMUSG00000064345 635.44 6601.54 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
11. Gm10800 ENSMUSG00000075014 624.41 6486.95 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
12. Hbb-y ENSMUSG00000052187 571.99 5942.37 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
13. Actb ENSMUSG00000029580 537.05 5579.38 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. mt-Co3 ENSMUSG00000064358 454.28 4719.49 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. Rpsa ENSMUSG00000032518 451.52 4690.81 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
16. mt-Nd3 ENSMUSG00000064360 442.33 4595.34 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
17. Gm13340 ENSMUSG00000083563 378.87 3936.06 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Hba-a1 ENSMUSG00000069919 338.41 3515.72 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
19. Mdk ENSMUSG00000027239 325.54 3382.01 midkine [Source:MGI Symbol;Acc:MGI:96949]
20. mt-Nd5 ENSMUSG00000064367 324.62 3372.46 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
21. Crabp1 ENSMUSG00000032291 313.58 3257.76 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
22. Tuba1b ENSMUSG00000023004 293.35 3047.59 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
23. Set ENSMUSG00000054766 282.32 2933.00 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
24. Rrm2 ENSMUSG00000020649 274.96 2856.54 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
25. Eif4g2 ENSMUSG00000005610 273.12 2837.43 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
26. Nedd4 ENSMUSG00000032216 273.12 2837.43 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Npm1 ENSMUSG00000057113 266.68 2770.52 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
28. Cfl1 ENSMUSG00000056201 261.17 2713.28 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
29. Tuba1a ENSMUSG00000072235 259.33 2694.16 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
30. Hba-x ENSMUSG00000055609 248.29 2579.47 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
31. Ubb ENSMUSG00000019505 220.70 2292.84 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
32. Tubb5 ENSMUSG00000001525 219.78 2283.28 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
33. Hnrnpc ENSMUSG00000060373 217.94 2264.16 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
34. Hsp90aa1 ENSMUSG00000021270 205.99 2140.02 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
35. Hsp90ab1 ENSMUSG00000023944 204.15 2120.90 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
36. Pkm ENSMUSG00000032294 197.71 2054.00 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
37. Tubb2b ENSMUSG00000045136 196.79 2044.44 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
38. Tpt1 ENSMUSG00000060126 194.04 2015.87 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
39. Tmsb4x ENSMUSG00000049775 192.20 1996.75 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
40. Rpl4 ENSMUSG00000032399 188.52 1958.52 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
41. Banf1 ENSMUSG00000024844 187.60 1948.96 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
42. Hbb-bh1 ENSMUSG00000052217 181.16 1882.06 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
43. Rpl23 ENSMUSG00000071415 179.32 1862.94 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
44. Eif5a ENSMUSG00000078812 178.40 1853.39 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
45. Hba-a2 ENSMUSG00000069917 174.72 1815.15 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
46. Paics ENSMUSG00000029247 173.80 1805.60 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
47. Ybx1 ENSMUSG00000028639 165.53 1719.68 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
48. Rps26 ENSMUSG00000025362 159.09 1652.78 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
49. H19 ENSMUSG00000000031 153.57 1595.43 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
50. Eef1b2 ENSMUSG00000025967 147.14 1528.63 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
51. Hnrnpa2b1 ENSMUSG00000004980 142.54 1480.84 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
52. Ran ENSMUSG00000029430 139.78 1452.17 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
53. Chchd2 ENSMUSG00000070493 137.02 1423.49 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
54. Pabpc1 ENSMUSG00000022283 135.18 1404.38 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
55. Rpl18a ENSMUSG00000045128 135.18 1404.38 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
56. Atp5g3 ENSMUSG00000018770 134.26 1394.82 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
57. Hnrnph1 ENSMUSG00000007850 129.66 1347.03 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
58. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 129.66 1347.03 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
59. Rps20 ENSMUSG00000028234 126.90 1318.36 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
60. Rps3a1 ENSMUSG00000028081 126.90 1318.36 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
61. mt-Rnr1 ENSMUSG00000064337 126.90 1318.36 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
62. Ywhab ENSMUSG00000018326 125.98 1308.80 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
63. U2af2 ENSMUSG00000030435 124.15 1289.79 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
64. 2810417H13Rik 118.63 1232.44 RIKEN cDNA 2810417H13 gene
65. Vim ENSMUSG00000026728 118.63 1232.44 vimentin [Source:MGI Symbol;Acc:MGI:98932]
66. Pcbp1 ENSMUSG00000051695 117.71 1222.88 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
67. Map1b ENSMUSG00000052727 116.79 1213.32 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
68. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 115.87 1203.77 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
69. Marcks ENSMUSG00000069662 114.95 1194.21 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
70. Plagl1 ENSMUSG00000019817 114.95 1194.21 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
71. Rps4x ENSMUSG00000031320 114.03 1184.65 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
72. Anp32b ENSMUSG00000028333 111.27 1155.98 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
73. Gm17132 ENSMUSG00000061331 110.35 1146.42 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
74. Morf4l1 ENSMUSG00000062270 110.35 1146.42 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
75. Trim28 ENSMUSG00000005566 109.43 1136.86 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
76. Ccnd2 ENSMUSG00000000184 108.51 1127.30 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
77. Kpnb1 ENSMUSG00000001440 108.51 1127.30 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
78. Cdk4 ENSMUSG00000006728 105.75 1098.63 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
79. Gm5805 ENSMUSG00000061848 105.75 1098.63 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
80. Hmgn1 ENSMUSG00000040681 105.75 1098.63 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
81. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 105.75 1098.63 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
82. Rplp1 ENSMUSG00000007892 102.08 1060.50 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
83. Sox2 ENSMUSG00000074637 102.08 1060.50 SRY (sex determining region Y)-box 2 [Source:MGI Symbol;Acc:MGI:98364]
84. Ywhaq ENSMUSG00000076432 102.08 1060.50 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta [Source:MGI Symbol;Acc:MGI:891963]
85. Ldha ENSMUSG00000063229 101.16 1050.94 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
86. H3f3b ENSMUSG00000016559 99.32 1031.83 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
87. Lamp1 ENSMUSG00000031447 98.40 1022.27 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
88. Ndufa12 ENSMUSG00000020022 98.40 1022.27 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
89. Tmpo ENSMUSG00000019961 98.40 1022.27 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
90. Ywhaz ENSMUSG00000022285 97.48 1012.71 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
91. Caprin1 ENSMUSG00000027184 95.64 993.60 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
92. Grb10 ENSMUSG00000020176 95.64 993.60 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
93. Zic1 ENSMUSG00000032368 95.64 993.60 zinc finger protein of the cerebellum 1 [Source:MGI Symbol;Acc:MGI:106683]
94. Rps5 ENSMUSG00000012848 94.72 984.04 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
95. Gm14303 ENSMUSG00000081344 92.88 964.92 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
96. Rps9 ENSMUSG00000006333 92.88 964.92 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
97. Slc25a5 ENSMUSG00000016319 92.88 964.92 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5 [Source:MGI Symbol;Acc:MGI:1353496]
98. Gm15459 ENSMUSG00000100801 91.96 955.37 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
99. Marcksl1 ENSMUSG00000047945 91.04 945.81 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
100. Ngfrap1 91.04 945.81 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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