Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s8.

Sample reads: 96,247. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3934.36 40877.80 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 2745.78 28528.52 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 1935.88 20113.70 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Co2 ENSMUSG00000064354 1694.77 17608.57 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd1 ENSMUSG00000064341 1608.98 16717.22 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Nd4 ENSMUSG00000064363 1562.62 16235.54 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1109.75 11530.25 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr2 ENSMUSG00000064339 778.22 8085.67 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. mt-Co3 ENSMUSG00000064358 632.16 6568.11 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
10. Hbb-y ENSMUSG00000052187 625.97 6503.80 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
11. Eef1a1 ENSMUSG00000037742 608.97 6327.17 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
12. mt-Nd2 ENSMUSG00000064345 539.42 5604.55 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
13. mt-Nd3 ENSMUSG00000064360 526.28 5468.02 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Actb ENSMUSG00000029580 469.87 4881.93 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. Rpsa ENSMUSG00000032518 428.14 4448.35 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
16. Mdk ENSMUSG00000027239 392.59 4078.99 midkine [Source:MGI Symbol;Acc:MGI:96949]
17. Hba-a1 ENSMUSG00000069919 337.72 3508.89 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
18. Gm13340 ENSMUSG00000083563 326.12 3388.37 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Hba-x ENSMUSG00000055609 313.76 3259.95 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
20. Npm1 ENSMUSG00000057113 302.17 3139.53 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
21. Tubb2b ENSMUSG00000045136 297.53 3091.32 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
22. Tubb5 ENSMUSG00000001525 289.03 3003.01 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
23. Tuba1a ENSMUSG00000072235 266.62 2770.17 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
24. Set ENSMUSG00000054766 262.75 2729.96 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
25. Rrm2 ENSMUSG00000020649 256.57 2665.75 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
26. Tuba1b ENSMUSG00000023004 255.03 2649.75 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
27. Nedd4 ENSMUSG00000032216 247.30 2569.43 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
28. Gm10800 ENSMUSG00000075014 246.53 2561.43 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
29. Pkm ENSMUSG00000032294 244.98 2545.33 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
30. Crabp1 ENSMUSG00000032291 242.66 2521.23 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
31. Cfl1 ENSMUSG00000056201 241.89 2513.22 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
32. Ubb ENSMUSG00000019505 240.34 2497.12 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
33. Eif4g2 ENSMUSG00000005610 236.48 2457.02 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
34. Ran ENSMUSG00000029430 224.89 2336.60 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
35. Tmsb4x ENSMUSG00000049775 221.02 2296.39 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
36. Ybx1 ENSMUSG00000028639 217.16 2256.28 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
37. Rpl4 ENSMUSG00000032399 211.75 2200.07 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
38. mt-Nd5 ENSMUSG00000064367 198.61 2063.55 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
39. Eif5a ENSMUSG00000078812 193.20 2007.34 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
40. H19 ENSMUSG00000000031 187.79 1951.13 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
41. Tpt1 ENSMUSG00000060126 186.25 1935.13 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
42. Hsp90ab1 ENSMUSG00000023944 183.93 1911.02 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
43. Chchd2 ENSMUSG00000070493 180.06 1870.81 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
44. Hbb-bh1 ENSMUSG00000052217 179.29 1862.81 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
45. Atp5g3 ENSMUSG00000018770 173.88 1806.60 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
46. Hsp90aa1 ENSMUSG00000021270 171.56 1782.50 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
47. U2af2 ENSMUSG00000030435 161.52 1678.18 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
48. Hba-a2 ENSMUSG00000069917 160.74 1670.08 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
49. Banf1 ENSMUSG00000024844 158.43 1646.08 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
50. Map1b ENSMUSG00000052727 158.43 1646.08 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
51. Rpl23 ENSMUSG00000071415 156.88 1629.98 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
52. Hnrnpc ENSMUSG00000060373 147.61 1533.66 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
53. Rplp1 ENSMUSG00000007892 147.61 1533.66 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
54. Rps26 ENSMUSG00000025362 146.83 1525.56 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
55. Vim ENSMUSG00000026728 146.06 1517.56 vimentin [Source:MGI Symbol;Acc:MGI:98932]
56. Eef1b2 ENSMUSG00000025967 138.33 1437.24 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
57. Marcks ENSMUSG00000069662 136.79 1421.24 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
58. Pcbp1 ENSMUSG00000051695 135.24 1405.14 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
59. Cdkn1c ENSMUSG00000037664 134.47 1397.14 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
60. Rps20 ENSMUSG00000028234 132.92 1381.03 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
61. Paics ENSMUSG00000029247 131.38 1365.03 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
62. Sox2 ENSMUSG00000074637 130.60 1356.93 SRY (sex determining region Y)-box 2 [Source:MGI Symbol;Acc:MGI:98364]
63. Hnrnpa2b1 ENSMUSG00000004980 129.06 1340.93 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
64. Ywhae ENSMUSG00000020849 126.74 1316.82 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
65. Hmgn1 ENSMUSG00000040681 125.19 1300.72 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
66. Ndufa12 ENSMUSG00000020022 122.88 1276.72 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
67. Rpl18a ENSMUSG00000045128 121.33 1260.61 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
68. Rps4x ENSMUSG00000031320 120.56 1252.61 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
69. Fkbp1a ENSMUSG00000032966 119.79 1244.61 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
70. Marcksl1 ENSMUSG00000047945 118.24 1228.51 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
71. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 117.47 1220.51 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
72. Rpl41 ENSMUSG00000093674 115.92 1204.40 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
73. Rps3a1 ENSMUSG00000028081 114.38 1188.40 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
74. Pabpc1 ENSMUSG00000022283 112.06 1164.30 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
75. Cdk4 ENSMUSG00000006728 110.51 1148.19 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
76. Sub1 ENSMUSG00000022205 109.74 1140.19 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
77. Trp53i11 ENSMUSG00000068735 108.97 1132.19 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
78. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 103.56 1075.98 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
79. Gm14303 ENSMUSG00000081344 102.78 1067.88 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
80. Hnrnpa0 ENSMUSG00000007836 102.78 1067.88 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
81. Msi1 ENSMUSG00000054256 102.78 1067.88 musashi RNA-binding protein 1 [Source:MGI Symbol;Acc:MGI:107376]
82. Tmpo ENSMUSG00000019961 102.78 1067.88 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
83. Stmn1 ENSMUSG00000028832 101.24 1051.88 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
84. Ywhab ENSMUSG00000018326 101.24 1051.88 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
85. Rpl32 ENSMUSG00000057841 100.46 1043.77 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
86. Ywhaz ENSMUSG00000022285 100.46 1043.77 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
87. Anp32b ENSMUSG00000028333 98.92 1027.77 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
88. Ckb ENSMUSG00000001270 98.92 1027.77 creatine kinase, brain [Source:MGI Symbol;Acc:MGI:88407]
89. Grb10 ENSMUSG00000020176 98.92 1027.77 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
90. Zic1 ENSMUSG00000032368 97.37 1011.67 zinc finger protein of the cerebellum 1 [Source:MGI Symbol;Acc:MGI:106683]
91. Cox8a ENSMUSG00000035885 96.60 1003.67 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
92. Hnrnph1 ENSMUSG00000007850 95.83 995.67 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
93. Nrep ENSMUSG00000042834 95.06 987.67 neuronal regeneration related protein [Source:MGI Symbol;Acc:MGI:99444]
94. mt-Rnr1 ENSMUSG00000064337 94.28 979.56 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
95. Ddx5 ENSMUSG00000020719 93.51 971.56 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
96. Rps5 ENSMUSG00000012848 92.74 963.56 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
97. Gm5805 ENSMUSG00000061848 91.96 955.46 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
98. Rpl8 ENSMUSG00000003970 91.96 955.46 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
99. Gnai2 ENSMUSG00000032562 91.19 947.46 guanine nucleotide binding protein (G protein), alpha inhibiting 2 [Source:MGI Symbol;Acc:MGI:95772]
100. Sfpq ENSMUSG00000028820 91.19 947.46 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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