Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s7.

Sample reads: 96,251. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4361.84 45317.12 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3222.64 33481.46 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Nd1 ENSMUSG00000064341 1733.33 18008.34 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
4. mt-Atp6 ENSMUSG00000064357 1572.86 16341.15 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Nd4 ENSMUSG00000064363 1456.16 15128.70 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Co2 ENSMUSG00000064354 1413.72 14687.77 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. Gm10800 ENSMUSG00000075014 1167.05 12125.01 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
8. mt-Co1 ENSMUSG00000064351 1164.40 12097.48 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. Hbb-y ENSMUSG00000052187 738.69 7674.58 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
10. mt-Rnr2 ENSMUSG00000064339 734.71 7633.23 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
11. Eef1a1 ENSMUSG00000037742 708.19 7357.70 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
12. Actb ENSMUSG00000029580 531.80 5525.11 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. mt-Co3 ENSMUSG00000064358 514.56 5346.00 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
14. mt-Nd2 ENSMUSG00000064345 499.97 5194.41 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
15. Mdk ENSMUSG00000027239 466.82 4850.00 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. mt-Nd3 ENSMUSG00000064360 441.62 4588.19 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
17. Rpsa ENSMUSG00000032518 377.96 3926.80 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
18. Hba-x ENSMUSG00000055609 367.35 3816.56 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
19. Hba-a1 ENSMUSG00000069919 334.20 3472.15 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
20. Tuba1b ENSMUSG00000023004 324.92 3375.74 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
21. Gm13340 ENSMUSG00000083563 299.72 3113.93 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
22. Tmsb4x ENSMUSG00000049775 257.28 2673.00 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
23. Tubb2b ENSMUSG00000045136 249.32 2590.30 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
24. Eif4g2 ENSMUSG00000005610 245.35 2549.05 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
25. Npm1 ENSMUSG00000057113 244.02 2535.23 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
26. Tubb5 ENSMUSG00000001525 238.71 2480.07 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
27. Tuba1a ENSMUSG00000072235 237.39 2466.35 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
28. Ubb ENSMUSG00000019505 234.74 2438.82 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
29. Set ENSMUSG00000054766 232.08 2411.18 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
30. Rpl18a ENSMUSG00000045128 225.45 2342.30 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
31. Rpl4 ENSMUSG00000032399 222.80 2314.77 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
32. Tpt1 ENSMUSG00000060126 221.47 2300.95 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
33. Pkm ENSMUSG00000032294 217.50 2259.71 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
34. Rrm2 ENSMUSG00000020649 217.50 2259.71 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
35. Crabp1 ENSMUSG00000032291 201.58 2094.31 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
36. H19 ENSMUSG00000000031 198.93 2066.77 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
37. Eif5a ENSMUSG00000078812 194.95 2025.42 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
38. mt-Nd5 ENSMUSG00000064367 192.30 1997.89 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
39. Cfl1 ENSMUSG00000056201 189.65 1970.36 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
40. Hbb-bh1 ENSMUSG00000052217 185.67 1929.01 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
41. Hba-a2 ENSMUSG00000069917 183.01 1901.37 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
42. Hsp90aa1 ENSMUSG00000021270 181.69 1887.66 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
43. Banf1 ENSMUSG00000024844 180.36 1873.84 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
44. Hnrnpc ENSMUSG00000060373 179.04 1860.13 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
45. Chchd2 ENSMUSG00000070493 173.73 1804.96 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
46. Ran ENSMUSG00000029430 169.75 1763.61 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
47. Rpl23 ENSMUSG00000071415 167.10 1736.08 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
48. Nedd4 ENSMUSG00000032216 160.47 1667.19 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
49. Hsp90ab1 ENSMUSG00000023944 153.84 1598.31 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
50. Rps3a1 ENSMUSG00000028081 153.84 1598.31 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
51. Ybx1 ENSMUSG00000028639 149.86 1556.96 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
52. Gm14303 ENSMUSG00000081344 147.21 1529.43 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
53. Rps26 ENSMUSG00000025362 145.88 1515.61 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
54. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 144.55 1501.79 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
55. Marcksl1 ENSMUSG00000047945 141.90 1474.26 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
56. Pcbp1 ENSMUSG00000051695 139.25 1446.73 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
57. U2af2 ENSMUSG00000030435 139.25 1446.73 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
58. Sox2 ENSMUSG00000074637 135.27 1405.38 SRY (sex determining region Y)-box 2 [Source:MGI Symbol;Acc:MGI:98364]
59. Map1b ENSMUSG00000052727 133.95 1391.67 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
60. Rplp1 ENSMUSG00000007892 133.95 1391.67 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
61. Hnrnpa2b1 ENSMUSG00000004980 132.62 1377.85 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
62. Trp53i11 ENSMUSG00000068735 132.62 1377.85 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
63. Atp5g3 ENSMUSG00000018770 131.29 1364.03 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
64. Rps20 ENSMUSG00000028234 131.29 1364.03 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
65. Paics ENSMUSG00000029247 129.97 1350.32 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
66. Gm5805 ENSMUSG00000061848 123.34 1281.43 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
67. Vim ENSMUSG00000026728 123.34 1281.43 vimentin [Source:MGI Symbol;Acc:MGI:98932]
68. Hnrnpa0 ENSMUSG00000007836 120.68 1253.80 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
69. Pabpc1 ENSMUSG00000022283 120.68 1253.80 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
70. Hmgn1 ENSMUSG00000040681 119.36 1240.08 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
71. Hnrnph1 ENSMUSG00000007850 119.36 1240.08 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
72. Eef1b2 ENSMUSG00000025967 112.73 1171.20 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
73. Grb10 ENSMUSG00000020176 112.73 1171.20 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
74. Ldha ENSMUSG00000063229 111.40 1157.38 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
75. Rpl37 ENSMUSG00000041841 111.40 1157.38 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
76. Trim28 ENSMUSG00000005566 110.07 1143.57 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
77. Cd24a ENSMUSG00000047139 106.10 1102.32 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
78. Marcks ENSMUSG00000069662 106.10 1102.32 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
79. Morf4l1 ENSMUSG00000062270 106.10 1102.32 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
80. Ywhab ENSMUSG00000018326 104.77 1088.50 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
81. Myl6 ENSMUSG00000090841 103.44 1074.68 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
82. Ywhae ENSMUSG00000020849 102.12 1060.97 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
83. Rps5 ENSMUSG00000012848 100.79 1047.15 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
84. Stmn1 ENSMUSG00000028832 100.79 1047.15 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
85. Kpnb1 ENSMUSG00000001440 99.46 1033.33 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
86. Rpl32 ENSMUSG00000057841 98.14 1019.62 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
87. mt-Rnr1 ENSMUSG00000064337 98.14 1019.62 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
88. Ndufa12 ENSMUSG00000020022 96.81 1005.80 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
89. Srsf3 ENSMUSG00000071172 96.81 1005.80 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
90. Ckb ENSMUSG00000001270 95.49 992.09 creatine kinase, brain [Source:MGI Symbol;Acc:MGI:88407]
91. Eef2 ENSMUSG00000034994 95.49 992.09 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
92. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 95.49 992.09 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
93. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 95.49 992.09 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
94. Zic1 ENSMUSG00000032368 95.49 992.09 zinc finger protein of the cerebellum 1 [Source:MGI Symbol;Acc:MGI:106683]
95. Fkbp1a ENSMUSG00000032966 94.16 978.27 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
96. Rpl41 ENSMUSG00000093674 94.16 978.27 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
97. Rps9 ENSMUSG00000006333 94.16 978.27 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
98. Cox8a ENSMUSG00000035885 92.83 964.45 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
99. Cdkn1c ENSMUSG00000037664 91.51 950.74 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
100. Rps4x ENSMUSG00000031320 91.51 950.74 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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