Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s6.

Sample reads: 96,258. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3658.42 38006.56 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 2501.76 25990.26 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2149.44 22330.08 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 1596.38 16584.46 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 1574.53 16357.46 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 1492.59 15506.20 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1078.82 11207.63 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. Eef1a1 ENSMUSG00000037742 760.63 7902.03 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
9. Gm10800 ENSMUSG00000075014 669.14 6951.55 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
10. mt-Nd3 ENSMUSG00000064360 663.68 6894.83 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. mt-Co3 ENSMUSG00000064358 650.02 6752.92 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. mt-Nd2 ENSMUSG00000064345 527.12 5476.14 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
13. Actb ENSMUSG00000029580 521.66 5419.42 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. Rpsa ENSMUSG00000032518 492.98 5121.47 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
15. Hbb-y ENSMUSG00000052187 457.47 4752.56 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
16. Tubb2b ENSMUSG00000045136 415.14 4312.80 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
17. Mdk ENSMUSG00000027239 387.83 4029.08 midkine [Source:MGI Symbol;Acc:MGI:96949]
18. Tuba1b ENSMUSG00000023004 370.08 3844.68 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
19. Pkm ENSMUSG00000032294 361.88 3759.50 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
20. mt-Rnr2 ENSMUSG00000064339 352.32 3660.18 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
21. Cfl1 ENSMUSG00000056201 348.23 3617.69 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
22. Tubb5 ENSMUSG00000001525 327.74 3404.82 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
23. Gm13340 ENSMUSG00000083563 326.38 3390.69 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
24. Tmsb4x ENSMUSG00000049775 296.33 3078.51 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
25. Npm1 ENSMUSG00000057113 266.29 2766.43 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
26. Tpt1 ENSMUSG00000060126 266.29 2766.43 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
27. H19 ENSMUSG00000000031 255.37 2652.99 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
28. Ubb ENSMUSG00000019505 248.54 2582.03 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
29. Eif4g2 ENSMUSG00000005610 247.17 2567.80 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
30. Nedd4 ENSMUSG00000032216 236.25 2454.35 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
31. Rpl4 ENSMUSG00000032399 226.69 2355.03 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
32. Tuba1a ENSMUSG00000072235 219.86 2284.08 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
33. Hba-a1 ENSMUSG00000069919 218.49 2269.85 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
34. Hba-x ENSMUSG00000055609 211.67 2199.00 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
35. Rrm2 ENSMUSG00000020649 207.57 2156.40 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
36. Rpl23 ENSMUSG00000071415 188.45 1957.77 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
37. Chchd2 ENSMUSG00000070493 187.09 1943.64 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
38. Eif5a ENSMUSG00000078812 187.09 1943.64 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
39. Msi1 ENSMUSG00000054256 185.72 1929.41 musashi RNA-binding protein 1 [Source:MGI Symbol;Acc:MGI:107376]
40. Rnd2 ENSMUSG00000001313 184.35 1915.17 Rho family GTPase 2 [Source:MGI Symbol;Acc:MGI:1338755]
41. mt-Nd5 ENSMUSG00000064367 177.53 1844.32 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
42. U2af2 ENSMUSG00000030435 170.70 1773.37 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
43. Gm17132 ENSMUSG00000061331 166.60 1730.77 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
44. Rps20 ENSMUSG00000028234 162.51 1688.28 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
45. Atp5g3 ENSMUSG00000018770 161.14 1674.05 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
46. Crabp1 ENSMUSG00000032291 158.41 1645.69 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
47. Map1b ENSMUSG00000052727 158.41 1645.69 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
48. Ndufa12 ENSMUSG00000020022 158.41 1645.69 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
49. Paics ENSMUSG00000029247 157.04 1631.46 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
50. Banf1 ENSMUSG00000024844 154.31 1603.09 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
51. Hsp90aa1 ENSMUSG00000021270 152.95 1588.97 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
52. Rpl18a ENSMUSG00000045128 152.95 1588.97 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
53. Hnrnpc ENSMUSG00000060373 151.58 1574.73 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
54. Rps26 ENSMUSG00000025362 151.58 1574.73 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
55. Hsp90ab1 ENSMUSG00000023944 144.75 1503.78 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
56. Ran ENSMUSG00000029430 144.75 1503.78 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
57. Trp53i11 ENSMUSG00000068735 142.02 1475.42 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
58. Vim ENSMUSG00000026728 140.66 1461.29 vimentin [Source:MGI Symbol;Acc:MGI:98932]
59. Hnrnpa2b1 ENSMUSG00000004980 139.29 1447.05 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
60. Pcbp1 ENSMUSG00000051695 136.56 1418.69 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
61. Ywhaz ENSMUSG00000022285 132.46 1376.10 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
62. Rplp1 ENSMUSG00000007892 131.10 1361.97 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
63. Grb10 ENSMUSG00000020176 128.37 1333.61 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
64. Ybx1 ENSMUSG00000028639 128.37 1333.61 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
65. Rps3a1 ENSMUSG00000028081 127.00 1319.38 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
66. Jund ENSMUSG00000071076, ENSMUSG00000110974 124.27 1291.01 jun D proto-oncogene [Source:MGI Symbol;Acc:MGI:96648]
67. Cd24a ENSMUSG00000047139 122.90 1276.78 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
68. Hmgn1 ENSMUSG00000040681 122.90 1276.78 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
69. Myl6 ENSMUSG00000090841 122.90 1276.78 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
70. Eef1b2 ENSMUSG00000025967 121.54 1262.65 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
71. Hnrnpa0 ENSMUSG00000007836 121.54 1262.65 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
72. Ywhae ENSMUSG00000020849 118.81 1234.29 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
73. Sox2 ENSMUSG00000074637 117.44 1220.06 SRY (sex determining region Y)-box 2 [Source:MGI Symbol;Acc:MGI:98364]
74. Ssbp3 ENSMUSG00000061887 117.44 1220.06 single-stranded DNA binding protein 3 [Source:MGI Symbol;Acc:MGI:1919725]
75. Hba-a2 ENSMUSG00000069917 114.71 1191.70 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
76. Ldha ENSMUSG00000063229 113.34 1177.47 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
77. Rps9 ENSMUSG00000006333 111.98 1163.34 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
78. Trim28 ENSMUSG00000005566 111.98 1163.34 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
79. Fkbp1a ENSMUSG00000032966 110.61 1149.10 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
80. Eef2 ENSMUSG00000034994 109.25 1134.98 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
81. Marcksl1 ENSMUSG00000047945 109.25 1134.98 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
82. Lamp1 ENSMUSG00000031447 106.52 1106.61 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
83. Rps4x ENSMUSG00000031320 106.52 1106.61 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
84. Cdk4 ENSMUSG00000006728 103.78 1078.15 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
85. Gnai2 ENSMUSG00000032562 103.78 1078.15 guanine nucleotide binding protein (G protein), alpha inhibiting 2 [Source:MGI Symbol;Acc:MGI:95772]
86. H3f3b ENSMUSG00000016559 103.78 1078.15 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
87. Gm14303 ENSMUSG00000081344 102.42 1064.02 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
88. Gm5963 ENSMUSG00000052192 102.42 1064.02 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
89. Ddx5 ENSMUSG00000020719 99.69 1035.66 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
90. Rpl32 ENSMUSG00000057841 99.69 1035.66 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
91. Hnrnph1 ENSMUSG00000007850 98.32 1021.43 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
92. Miat ENSMUSG00000097767 98.32 1021.43 myocardial infarction associated transcript (non-protein coding) [Source:MGI Symbol;Acc:MGI:2444886]
93. Ndufc2 ENSMUSG00000030647 98.32 1021.43 NADH:ubiquinone oxidoreductase subunit C2 [Source:MGI Symbol;Acc:MGI:1344370]
94. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 98.32 1021.43 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
95. Gm5805 ENSMUSG00000061848 96.96 1007.30 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
96. Marcks ENSMUSG00000069662 96.96 1007.30 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
97. Rpl37 ENSMUSG00000041841 96.96 1007.30 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
98. Rps5 ENSMUSG00000012848 95.59 993.06 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
99. Pabpc1 ENSMUSG00000022283 94.23 978.94 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
100. Tecr ENSMUSG00000031708 92.86 964.70 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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