Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s4.

Sample reads: 96,262. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3579.30 37183.06 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 3154.89 32774.13 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 2104.70 21864.38 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 2013.76 20919.66 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Co2 ENSMUSG00000064354 1944.47 20199.85 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd1 ENSMUSG00000064341 1758.25 18265.33 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. Hbb-y ENSMUSG00000052187 1455.10 15116.10 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
8. mt-Co1 ENSMUSG00000064351 1418.29 14733.71 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Nd3 ENSMUSG00000064360 857.47 8907.71 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. Hba-a1 ENSMUSG00000069919 818.50 8502.87 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
11. Gm10800 ENSMUSG00000075014 812.00 8435.35 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
12. Hba-x ENSMUSG00000055609 781.69 8120.48 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
13. Actb ENSMUSG00000029580 751.37 7805.50 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. mt-Co3 ENSMUSG00000064358 721.06 7490.63 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. Mdk ENSMUSG00000027239 671.25 6973.19 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. Eef1a1 ENSMUSG00000037742 666.92 6928.20 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
17. mt-Nd2 ENSMUSG00000064345 614.95 6388.32 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
18. H19 ENSMUSG00000000031 560.82 5826.00 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
19. mt-Rnr2 ENSMUSG00000064339 521.85 5421.17 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
20. Hba-a2 ENSMUSG00000069917 424.41 4408.92 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
21. Gm13340 ENSMUSG00000083563 372.44 3869.04 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
22. Rpsa ENSMUSG00000032518 335.63 3486.65 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
23. Hbb-bh1 ENSMUSG00000052217 318.30 3306.61 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
24. Tuba1b ENSMUSG00000023004 275.00 2856.80 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
25. Cfl1 ENSMUSG00000056201 268.50 2789.27 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
26. Igf2 ENSMUSG00000048583 240.35 2496.84 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
27. Rpl18a ENSMUSG00000045128 240.35 2496.84 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
28. mt-Nd5 ENSMUSG00000064367 240.35 2496.84 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
29. Nedd4 ENSMUSG00000032216 223.03 2316.92 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
30. Pkm ENSMUSG00000032294 220.86 2294.37 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
31. Tpt1 ENSMUSG00000060126 218.70 2271.93 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
32. Tubb2b ENSMUSG00000045136 210.04 2181.97 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
33. Tubb5 ENSMUSG00000001525 194.88 2024.48 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
34. Ubb ENSMUSG00000019505 194.88 2024.48 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
35. Npm1 ENSMUSG00000057113 181.89 1889.54 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
36. Rpl4 ENSMUSG00000032399 181.89 1889.54 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
37. Eif4g2 ENSMUSG00000005610 179.72 1867.00 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
38. Tmsb4x ENSMUSG00000049775 168.90 1754.59 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
39. Rrm2 ENSMUSG00000020649 162.40 1687.07 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
40. Eif5a ENSMUSG00000078812 158.07 1642.09 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
41. Rps26 ENSMUSG00000025362 151.57 1574.56 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
42. Banf1 ENSMUSG00000024844 149.41 1552.12 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
43. Rpl23 ENSMUSG00000071415 149.41 1552.12 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
44. Atp5g3 ENSMUSG00000018770 145.08 1507.14 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
45. Rplp1 ENSMUSG00000007892 142.91 1484.60 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
46. Hsp90ab1 ENSMUSG00000023944 140.75 1462.16 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
47. Rps20 ENSMUSG00000028234 138.58 1439.62 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
48. Grb10 ENSMUSG00000020176 134.25 1394.64 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
49. Ran ENSMUSG00000029430 134.25 1394.64 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
50. Myl6 ENSMUSG00000090841 132.09 1372.20 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
51. Chchd2 ENSMUSG00000070493 129.92 1349.66 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
52. Hnrnpc ENSMUSG00000060373 125.59 1304.67 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
53. Hsp90aa1 ENSMUSG00000021270 123.42 1282.13 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
54. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 121.26 1259.69 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
55. Eef1b2 ENSMUSG00000025967 114.76 1192.17 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
56. Paics ENSMUSG00000029247 114.76 1192.17 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
57. Tuba1a ENSMUSG00000072235 114.76 1192.17 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
58. Gm17132 ENSMUSG00000061331 110.43 1147.19 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
59. Pcbp1 ENSMUSG00000051695 108.27 1124.75 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
60. Rps4x ENSMUSG00000031320 108.27 1124.75 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
61. Gm14303 ENSMUSG00000081344 106.10 1102.20 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
62. Rps3a1 ENSMUSG00000028081 106.10 1102.20 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
63. Hnrnpa2b1 ENSMUSG00000004980 103.94 1079.77 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
64. Fkbp1a ENSMUSG00000032966 101.77 1057.22 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
65. Gm5805 ENSMUSG00000061848 101.77 1057.22 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
66. Map1b ENSMUSG00000052727 101.77 1057.22 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
67. Ywhae ENSMUSG00000020849 101.77 1057.22 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
68. Ldha ENSMUSG00000063229 99.61 1034.78 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
69. Ndufa12 ENSMUSG00000020022 99.61 1034.78 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
70. Rnd2 ENSMUSG00000001313 99.61 1034.78 Rho family GTPase 2 [Source:MGI Symbol;Acc:MGI:1338755]
71. Rpl32 ENSMUSG00000057841 99.61 1034.78 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
72. Trim28 ENSMUSG00000005566 99.61 1034.78 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
73. Ywhab ENSMUSG00000018326 99.61 1034.78 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
74. Cdk4 ENSMUSG00000006728 97.44 1012.24 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
75. Sfpq ENSMUSG00000028820 97.44 1012.24 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
76. Lamp1 ENSMUSG00000031447 95.27 989.70 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
77. Msi1 ENSMUSG00000054256 95.27 989.70 musashi RNA-binding protein 1 [Source:MGI Symbol;Acc:MGI:107376]
78. Rpl37 ENSMUSG00000041841 95.27 989.70 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
79. Tmsb10 ENSMUSG00000079523 95.27 989.70 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
80. Vim ENSMUSG00000026728 95.27 989.70 vimentin [Source:MGI Symbol;Acc:MGI:98932]
81. Pabpc1 ENSMUSG00000022283 93.11 967.26 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
82. Anp32b ENSMUSG00000028333 90.94 944.72 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
83. Hmga2 ENSMUSG00000056758 90.94 944.72 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
84. Hnrnph1 ENSMUSG00000007850 90.94 944.72 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
85. Morf4l1 ENSMUSG00000062270 90.94 944.72 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
86. Rps5 ENSMUSG00000012848 90.94 944.72 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
87. Caprin1 ENSMUSG00000027184 88.78 922.28 cell cycle associated protein 1 [Source:MGI Symbol;Acc:MGI:1858234]
88. Rpl8 ENSMUSG00000003970 88.78 922.28 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
89. Srsf3 ENSMUSG00000071172 88.78 922.28 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
90. Ssbp3 ENSMUSG00000061887 88.78 922.28 single-stranded DNA binding protein 3 [Source:MGI Symbol;Acc:MGI:1919725]
91. mt-Rnr1 ENSMUSG00000064337 88.78 922.28 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
92. Ddx5 ENSMUSG00000020719 86.61 899.74 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
93. Hnrnpa0 ENSMUSG00000007836 86.61 899.74 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
94. Gm26870 ENSMUSG00000097312 84.45 877.30 predicted gene, 26870 [Source:MGI Symbol;Acc:MGI:5477364]
95. Hnrnpk ENSMUSG00000021546 84.45 877.30 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
96. Kpnb1 ENSMUSG00000001440 84.45 877.30 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
97. Maged1 ENSMUSG00000025151 84.45 877.30 melanoma antigen, family D, 1 [Source:MGI Symbol;Acc:MGI:1930187]
98. Atp5b ENSMUSG00000025393 82.28 854.75 ATP synthase, H+ transporting mitochondrial F1 complex, beta subunit [Source:MGI Symbol;Acc:MGI:107801]
99. Wnt1 ENSMUSG00000022997 82.28 854.75 wingless-type MMTV integration site family, member 1 [Source:MGI Symbol;Acc:MGI:98953]
100. Hmgn1 ENSMUSG00000040681 80.12 832.32 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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