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Experiment Mouse_E11_5_slice_3, section s22.

Sample reads: 96,251. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3665.61 38083.99 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 2837.76 29483.01 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2112.43 21947.17 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Co2 ENSMUSG00000064354 2017.08 20956.53 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd1 ENSMUSG00000064341 1695.17 17612.03 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Nd4 ENSMUSG00000064363 1493.72 15519.06 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1138.49 11828.38 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr2 ENSMUSG00000064339 885.26 9197.44 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. H19 ENSMUSG00000000031 709.44 7370.75 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
10. Actb ENSMUSG00000029580 680.22 7067.17 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. mt-Nd3 ENSMUSG00000064360 649.47 6747.69 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. mt-Nd2 ENSMUSG00000064345 648.95 6742.29 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
13. Eef1a1 ENSMUSG00000037742 585.39 6081.93 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
14. mt-Co3 ENSMUSG00000064358 580.78 6034.03 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. Mdk ENSMUSG00000027239 424.95 4415.03 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. Igf2 ENSMUSG00000048583 390.60 4058.15 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. Hbb-y ENSMUSG00000052187 360.36 3743.97 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
18. Gm13340 ENSMUSG00000083563 341.90 3552.18 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Rpsa ENSMUSG00000032518 306.02 3179.41 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
20. Cfl1 ENSMUSG00000056201 299.36 3110.21 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
21. Tubb5 ENSMUSG00000001525 285.01 2961.12 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
22. Nedd4 ENSMUSG00000032216 274.24 2849.23 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
23. Pkm ENSMUSG00000032294 270.65 2811.93 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
24. mt-Nd5 ENSMUSG00000064367 268.09 2785.33 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
25. Tuba1b ENSMUSG00000023004 263.99 2742.73 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
26. Hba-a1 ENSMUSG00000069919 238.36 2476.45 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
27. Cdkn1c ENSMUSG00000037664 236.31 2455.15 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
28. Tuba1a ENSMUSG00000072235 230.16 2391.26 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
29. Hmga2 ENSMUSG00000056758 225.54 2343.26 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
30. Npm1 ENSMUSG00000057113 217.34 2258.06 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
31. Hba-x ENSMUSG00000055609 213.24 2215.46 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
32. Ubb ENSMUSG00000019505 213.24 2215.46 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
33. Tpt1 ENSMUSG00000060126 210.68 2188.87 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
34. Tubb2b ENSMUSG00000045136 204.02 2119.67 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
35. Eif4g2 ENSMUSG00000005610 203.50 2114.27 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
36. Tmsb4x ENSMUSG00000049775 199.40 2071.67 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
37. Chchd2 ENSMUSG00000070493 185.05 1922.58 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
38. Rpl4 ENSMUSG00000032399 181.97 1890.58 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
39. Rps20 ENSMUSG00000028234 178.90 1858.69 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
40. Map1b ENSMUSG00000052727 170.18 1768.09 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
41. Hsp90ab1 ENSMUSG00000023944 169.67 1762.79 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
42. Rpl23 ENSMUSG00000071415 160.96 1672.30 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
43. Eif5a ENSMUSG00000078812 156.34 1624.30 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
44. Ybx1 ENSMUSG00000028639 147.12 1528.51 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
45. Set ENSMUSG00000054766 143.53 1491.21 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
46. Atp5g3 ENSMUSG00000018770 140.97 1464.61 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
47. Hnrnpc ENSMUSG00000060373 140.45 1459.21 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
48. Pcbp1 ENSMUSG00000051695 138.91 1443.21 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
49. Hsp90aa1 ENSMUSG00000021270 138.40 1437.91 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
50. Fkbp1a ENSMUSG00000032966 136.86 1421.91 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
51. Grb10 ENSMUSG00000020176 134.81 1400.61 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
52. mt-Rnr1 ENSMUSG00000064337 134.81 1400.61 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
53. Ywhab ENSMUSG00000018326 130.71 1358.02 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
54. Myl6 ENSMUSG00000090841 129.18 1342.12 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
55. Rpl18a ENSMUSG00000045128 128.15 1331.42 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
56. Rps3a1 ENSMUSG00000028081 123.54 1283.52 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
57. Cd24a ENSMUSG00000047139 123.02 1278.12 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
58. U2af2 ENSMUSG00000030435 122.00 1267.52 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
59. Marcks ENSMUSG00000069662 118.92 1235.52 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
60. Eef1b2 ENSMUSG00000025967 118.41 1230.22 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
61. Rps26 ENSMUSG00000025362 118.41 1230.22 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
62. Ndufa12 ENSMUSG00000020022 115.85 1203.63 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
63. Basp1 ENSMUSG00000045763 111.75 1161.03 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
64. Tmsb10 ENSMUSG00000079523 111.75 1161.03 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
65. Hmgn1 ENSMUSG00000040681 111.23 1155.63 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
66. Nnat ENSMUSG00000067786 109.70 1139.73 neuronatin [Source:MGI Symbol;Acc:MGI:104716]
67. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 109.18 1134.33 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
68. Hba-a2 ENSMUSG00000069917 108.67 1129.03 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
69. Ran ENSMUSG00000029430 108.67 1129.03 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
70. Rps4x ENSMUSG00000031320 108.67 1129.03 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
71. Col3a1 ENSMUSG00000026043 106.62 1107.73 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
72. Ywhaz ENSMUSG00000022285 105.60 1097.13 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
73. Ywhae ENSMUSG00000020849 104.57 1086.43 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
74. Fscn1 ENSMUSG00000029581 101.49 1054.43 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
75. Hnrnpa2b1 ENSMUSG00000004980 99.96 1038.54 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
76. Rps5 ENSMUSG00000012848 98.93 1027.84 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
77. Banf1 ENSMUSG00000024844 97.91 1017.24 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
78. Trim28 ENSMUSG00000005566 97.39 1011.84 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
79. Tubb3 ENSMUSG00000062380 97.39 1011.84 tubulin, beta 3 class III [Source:MGI Symbol;Acc:MGI:107813]
80. Stmn1 ENSMUSG00000028832 96.37 1001.24 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
81. Gm5805 ENSMUSG00000061848 95.86 995.94 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
82. Rps9 ENSMUSG00000006333 95.86 995.94 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
83. Ago2 ENSMUSG00000036698 95.34 990.54 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
84. Hbb-bh1 ENSMUSG00000052217 95.34 990.54 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
85. Lamp1 ENSMUSG00000031447 95.34 990.54 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
86. Pabpc1 ENSMUSG00000022283 95.34 990.54 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
87. Sub1 ENSMUSG00000022205 94.83 985.24 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
88. Tecr ENSMUSG00000031708 93.29 969.24 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
89. Ddx5 ENSMUSG00000020719 92.78 963.94 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
90. H3f3b ENSMUSG00000016559 90.73 942.64 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
91. Gm10800 ENSMUSG00000075014 88.68 921.34 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
92. Rpl41 ENSMUSG00000093674 88.17 916.05 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
93. Rrm2 ENSMUSG00000020649 88.17 916.05 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
94. Gm9844 ENSMUSG00000091955 87.65 910.64 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
95. Cdk4 ENSMUSG00000006728 87.14 905.34 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
96. Paics ENSMUSG00000029247 86.63 900.05 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
97. Ssbp3 ENSMUSG00000061887 86.63 900.05 single-stranded DNA binding protein 3 [Source:MGI Symbol;Acc:MGI:1919725]
98. Vim ENSMUSG00000026728 86.12 894.75 vimentin [Source:MGI Symbol;Acc:MGI:98932]
99. Ngfrap1 85.09 884.05 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
100. Rplp1 ENSMUSG00000007892 85.09 884.05 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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