Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s21.

Sample reads: 96,256. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3941.80 40951.16 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 2845.04 29556.98 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Nd1 ENSMUSG00000064341 1870.15 19428.89 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
4. mt-Nd4 ENSMUSG00000064363 1857.67 19299.24 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Atp6 ENSMUSG00000064357 1778.99 18481.84 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
6. mt-Co2 ENSMUSG00000064354 1429.72 14853.29 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Co1 ENSMUSG00000064351 1120.75 11643.42 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. Actb ENSMUSG00000029580 794.50 8254.02 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
9. mt-Rnr2 ENSMUSG00000064339 745.56 7745.59 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
10. Eef1a1 ENSMUSG00000037742 671.68 6978.05 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
11. mt-Nd3 ENSMUSG00000064360 644.81 6698.90 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. mt-Nd2 ENSMUSG00000064345 635.22 6599.27 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
13. H19 ENSMUSG00000000031 525.83 5462.82 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
14. mt-Co3 ENSMUSG00000064358 456.74 4745.05 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
15. Mdk ENSMUSG00000027239 446.19 4635.45 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. mt-Nd5 ENSMUSG00000064367 384.78 3997.46 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
17. Hbb-y ENSMUSG00000052187 336.80 3499.00 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
18. Gm13340 ENSMUSG00000083563 322.41 3349.50 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
19. Tuba1a ENSMUSG00000072235 319.53 3319.58 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
20. Igf2 ENSMUSG00000048583 312.81 3249.77 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
21. Tubb5 ENSMUSG00000001525 291.70 3030.46 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
22. Rpsa ENSMUSG00000032518 280.19 2910.88 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
23. Cfl1 ENSMUSG00000056201 261.96 2721.49 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
24. Hba-x ENSMUSG00000055609 257.16 2671.62 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
25. Eif4g2 ENSMUSG00000005610 254.28 2641.70 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
26. Nedd4 ENSMUSG00000032216 252.36 2621.76 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Pkm ENSMUSG00000032294 249.48 2591.84 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
28. Map1b ENSMUSG00000052727 237.97 2472.26 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
29. Tubb2b ENSMUSG00000045136 231.25 2402.44 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
30. Npm1 ENSMUSG00000057113 226.45 2352.58 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
31. Hba-a1 ENSMUSG00000069919 224.53 2332.63 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
32. Tuba1b ENSMUSG00000023004 224.53 2332.63 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
33. Ubb ENSMUSG00000019505 207.26 2153.21 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
34. Tpt1 ENSMUSG00000060126 206.30 2143.24 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
35. Cdkn1c ENSMUSG00000037664 184.23 1913.96 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
36. Hsp90ab1 ENSMUSG00000023944 182.31 1894.01 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
37. Tmsb4x ENSMUSG00000049775 174.64 1814.33 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
38. Chchd2 ENSMUSG00000070493 166.00 1724.57 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
39. Rpl23 ENSMUSG00000071415 163.12 1694.65 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
40. Cd24a ENSMUSG00000047139 160.24 1664.73 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
41. Rpl4 ENSMUSG00000032399 159.28 1654.75 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
42. Eif5a ENSMUSG00000078812 158.32 1644.78 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
43. Eef1b2 ENSMUSG00000025967 150.65 1565.10 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
44. Hsp90aa1 ENSMUSG00000021270 144.89 1505.25 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
45. Ybx1 ENSMUSG00000028639 143.93 1495.28 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
46. Gm10800 ENSMUSG00000075014 142.97 1485.31 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
47. Pcbp1 ENSMUSG00000051695 142.97 1485.31 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
48. Banf1 ENSMUSG00000024844 139.13 1445.41 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
49. Atp5g3 ENSMUSG00000018770 135.30 1405.62 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
50. Rps20 ENSMUSG00000028234 134.34 1395.65 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
51. Rps26 ENSMUSG00000025362 134.34 1395.65 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
52. Hmga2 ENSMUSG00000056758 132.42 1375.70 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
53. Ran ENSMUSG00000029430 131.46 1365.73 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
54. Rpl18a ENSMUSG00000045128 130.50 1355.76 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
55. Fkbp1a ENSMUSG00000032966 129.54 1345.78 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
56. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 129.54 1345.78 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
57. Pbx1 ENSMUSG00000052534 127.62 1325.84 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
58. Rps5 ENSMUSG00000012848 127.62 1325.84 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
59. Hnrnpc ENSMUSG00000060373 126.66 1315.86 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
60. Gm15459 ENSMUSG00000100801 125.70 1305.89 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
61. Grb10 ENSMUSG00000020176 122.82 1275.97 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
62. Marcksl1 ENSMUSG00000047945 118.98 1236.08 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
63. Stmn2 ENSMUSG00000027500 115.15 1196.29 stathmin-like 2 [Source:MGI Symbol;Acc:MGI:98241]
64. Marcks ENSMUSG00000069662 114.19 1186.31 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
65. Tubb3 ENSMUSG00000062380 114.19 1186.31 tubulin, beta 3 class III [Source:MGI Symbol;Acc:MGI:107813]
66. Nnat ENSMUSG00000067786 112.27 1166.37 neuronatin [Source:MGI Symbol;Acc:MGI:104716]
67. Hba-a2 ENSMUSG00000069917 111.31 1156.39 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
68. Rps4x ENSMUSG00000031320 111.31 1156.39 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
69. Hnrnpa2b1 ENSMUSG00000004980 110.35 1146.42 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
70. Set ENSMUSG00000054766 110.35 1146.42 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
71. Basp1 ENSMUSG00000045763 108.43 1126.47 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
72. Hmgn1 ENSMUSG00000040681 108.43 1126.47 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
73. Ywhab ENSMUSG00000018326 108.43 1126.47 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
74. Srsf3 ENSMUSG00000071172 107.47 1116.50 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
75. Ywhae ENSMUSG00000020849 107.47 1116.50 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
76. Fscn1 ENSMUSG00000029581 106.51 1106.53 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
77. Nefl ENSMUSG00000022055 106.51 1106.53 neurofilament, light polypeptide [Source:MGI Symbol;Acc:MGI:97313]
78. Trp53i11 ENSMUSG00000068735 105.55 1096.55 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
79. Tecr ENSMUSG00000031708 104.59 1086.58 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
80. U2af2 ENSMUSG00000030435 103.63 1076.61 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
81. Ywhag ENSMUSG00000051391 103.63 1076.61 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide [Source:MGI Symbol;Acc:MGI:108109]
82. Ngfrap1 101.71 1056.66 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
83. Stmn1 ENSMUSG00000028832 100.75 1046.69 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
84. Hbb-bh1 ENSMUSG00000052217 97.87 1016.77 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
85. Ndufa12 ENSMUSG00000020022 96.91 1006.79 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
86. Rps3a1 ENSMUSG00000028081 96.91 1006.79 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
87. Cdk4 ENSMUSG00000006728 95.95 996.82 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
88. Hnrnpa0 ENSMUSG00000007836 94.04 976.98 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
89. Hnrnpk ENSMUSG00000021546 93.08 967.00 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
90. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 93.08 967.00 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
91. Hnrnph1 ENSMUSG00000007850 92.12 957.03 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
92. Pabpc1 ENSMUSG00000022283 92.12 957.03 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
93. Actc1 ENSMUSG00000068614 90.20 937.08 actin, alpha, cardiac muscle 1 [Source:MGI Symbol;Acc:MGI:87905]
94. Col3a1 ENSMUSG00000026043 90.20 937.08 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
95. Gap43 ENSMUSG00000047261 90.20 937.08 growth associated protein 43 [Source:MGI Symbol;Acc:MGI:95639]
96. Cox8a ENSMUSG00000035885 89.24 927.11 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
97. Ddx5 ENSMUSG00000020719 89.24 927.11 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
98. Rpl32 ENSMUSG00000057841 89.24 927.11 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
99. Rplp1 ENSMUSG00000007892 89.24 927.11 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
100. Vim ENSMUSG00000026728 88.28 917.14 vimentin [Source:MGI Symbol;Acc:MGI:98932]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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