Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s16.

Sample reads: 96,257. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4031.86 41886.57 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 2992.11 31084.72 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2320.43 24106.70 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 1809.99 18803.80 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 1752.19 18203.32 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 1299.54 13500.78 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1149.87 11945.88 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. Eef1a1 ENSMUSG00000037742 805.52 8368.46 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
9. mt-Nd3 ENSMUSG00000064360 705.74 7331.86 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. Actb ENSMUSG00000029580 630.30 6548.12 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. mt-Co3 ENSMUSG00000064358 604.75 6282.68 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. H19 ENSMUSG00000000031 542.08 5631.61 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
13. Hbb-y ENSMUSG00000052187 473.33 4917.38 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
14. mt-Nd2 ENSMUSG00000064345 403.98 4196.91 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
15. Rpsa ENSMUSG00000032518 365.04 3792.36 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
16. Cfl1 ENSMUSG00000056201 363.21 3773.35 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
17. Tubb2b ENSMUSG00000045136 332.79 3457.32 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
18. Mdk ENSMUSG00000027239 330.97 3438.41 midkine [Source:MGI Symbol;Acc:MGI:96949]
19. Gm13340 ENSMUSG00000083563 318.19 3305.64 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. Pkm ENSMUSG00000032294 301.77 3135.06 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
21. Tubb5 ENSMUSG00000001525 293.25 3046.54 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
22. Ubb ENSMUSG00000019505 271.95 2825.26 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
23. Tuba1b ENSMUSG00000023004 268.30 2787.34 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. Crabp1 ENSMUSG00000032291 257.96 2679.92 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
25. Tmsb4x ENSMUSG00000049775 240.32 2496.66 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
26. Tpt1 ENSMUSG00000060126 234.84 2439.73 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
27. Eif4g2 ENSMUSG00000005610 226.93 2357.55 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
28. Npm1 ENSMUSG00000057113 223.89 2325.97 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
29. Map1b ENSMUSG00000052727 222.67 2313.30 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
30. Tuba1a ENSMUSG00000072235 222.07 2307.06 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
31. Rpl4 ENSMUSG00000032399 221.46 2300.72 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
32. Hba-a1 ENSMUSG00000069919 219.02 2275.38 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
33. Nedd4 ENSMUSG00000032216 219.02 2275.38 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
34. Igf2 ENSMUSG00000048583 197.12 2047.86 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
35. mt-Nd5 ENSMUSG00000064367 191.65 1991.03 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
36. mt-Rnr2 ENSMUSG00000064339 191.65 1991.03 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
37. Rps20 ENSMUSG00000028234 188.00 1953.11 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
38. Hba-x ENSMUSG00000055609 181.91 1889.84 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
39. Rpl18a ENSMUSG00000045128 174.61 1814.00 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
40. Chchd2 ENSMUSG00000070493 174.00 1807.67 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
41. Rrm2 ENSMUSG00000020649 171.57 1782.42 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
42. Hsp90aa1 ENSMUSG00000021270 169.13 1757.07 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
43. Cdkn1c ENSMUSG00000037664 167.31 1738.17 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
44. Hsp90ab1 ENSMUSG00000023944 164.88 1712.92 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
45. Hnrnpc ENSMUSG00000060373 163.05 1693.91 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
46. Rpl23 ENSMUSG00000071415 156.36 1624.41 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
47. Eif5a ENSMUSG00000078812 153.32 1592.83 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
48. Rplp1 ENSMUSG00000007892 146.62 1523.22 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
49. Rps26 ENSMUSG00000025362 143.58 1491.64 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
50. Ndufa12 ENSMUSG00000020022 142.37 1479.07 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
51. Atp5g3 ENSMUSG00000018770 139.32 1447.38 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
52. Fkbp1a ENSMUSG00000032966 139.32 1447.38 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
53. Pcbp1 ENSMUSG00000051695 136.89 1422.14 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
54. Eef1b2 ENSMUSG00000025967 135.06 1403.12 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
55. Ran ENSMUSG00000029430 133.24 1384.22 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
56. Paics ENSMUSG00000029247 127.16 1321.05 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
57. Rpl32 ENSMUSG00000057841 126.55 1314.71 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
58. Hnrnpa2b1 ENSMUSG00000004980 124.11 1289.37 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
59. Eef2 ENSMUSG00000034994 120.46 1251.45 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
60. Trim28 ENSMUSG00000005566 119.85 1245.11 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
61. Trp53i11 ENSMUSG00000068735 119.85 1245.11 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
62. Gm10800 ENSMUSG00000075014 118.03 1226.20 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
63. Myl6 ENSMUSG00000090841 118.03 1226.20 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
64. Rps4x ENSMUSG00000031320 116.81 1213.53 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
65. Rpl39-ps ENSMUSG00000036305 115.60 1200.96 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
66. Ywhab ENSMUSG00000018326 115.60 1200.96 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
67. Rpl37 ENSMUSG00000041841 113.77 1181.94 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
68. Ybx1 ENSMUSG00000028639 111.34 1156.70 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
69. Marcks ENSMUSG00000069662 110.12 1144.03 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
70. Tmsb10 ENSMUSG00000079523 110.12 1144.03 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
71. Jund ENSMUSG00000071076, ENSMUSG00000110974 108.90 1131.35 jun D proto-oncogene [Source:MGI Symbol;Acc:MGI:96648]
72. Gm9844 ENSMUSG00000091955 105.25 1093.43 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
73. Rps3a1 ENSMUSG00000028081 105.25 1093.43 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
74. Ywhaz ENSMUSG00000022285 104.04 1080.86 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
75. Hba-a2 ENSMUSG00000069917 102.82 1068.19 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
76. Hmgn1 ENSMUSG00000040681 102.82 1068.19 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
77. Morf4l1 ENSMUSG00000062270 102.82 1068.19 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
78. Pabpc1 ENSMUSG00000022283 102.82 1068.19 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
79. Vim ENSMUSG00000026728 102.21 1061.85 vimentin [Source:MGI Symbol;Acc:MGI:98932]
80. Tecr ENSMUSG00000031708 101.60 1055.51 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
81. Set ENSMUSG00000054766 99.17 1030.27 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
82. U2af2 ENSMUSG00000030435 99.17 1030.27 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
83. Gm5805 ENSMUSG00000061848 97.95 1017.59 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
84. Ddx5 ENSMUSG00000020719 97.34 1011.26 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
85. Ngfrap1 97.34 1011.26 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
86. Stmn1 ENSMUSG00000028832 96.74 1005.02 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
87. Ywhae ENSMUSG00000020849 96.74 1005.02 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
88. Ywhag ENSMUSG00000051391 95.52 992.35 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide [Source:MGI Symbol;Acc:MGI:108109]
89. Hnrnpa0 ENSMUSG00000007836 94.91 986.01 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
90. Nnat ENSMUSG00000067786 94.91 986.01 neuronatin [Source:MGI Symbol;Acc:MGI:104716]
91. Grb10 ENSMUSG00000020176 93.69 973.34 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
92. Fscn1 ENSMUSG00000029581 93.09 967.10 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
93. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 93.09 967.10 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
94. Morf4l2 ENSMUSG00000031422 92.48 960.76 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
95. Hmga2 ENSMUSG00000056758 91.87 954.43 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
96. Cdk4 ENSMUSG00000006728 91.26 948.09 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
97. Ldha ENSMUSG00000063229 90.65 941.75 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
98. Banf1 ENSMUSG00000024844 90.04 935.42 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
99. Gm8292 ENSMUSG00000100215 90.04 935.42 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
100. H3f3b ENSMUSG00000016559 90.04 935.42 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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