Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s15.

Sample reads: 96,257. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3388.48 35202.52 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3201.43 33259.28 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2201.22 22868.22 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Co2 ENSMUSG00000064354 1930.16 20052.21 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Rnr2 ENSMUSG00000064339 1710.88 17774.13 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
6. mt-Nd1 ENSMUSG00000064341 1696.62 17625.99 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Nd4 ENSMUSG00000064363 1676.54 17417.38 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
8. mt-Co1 ENSMUSG00000064351 1168.77 12142.21 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Co3 ENSMUSG00000064358 722.82 7509.29 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
10. Eef1a1 ENSMUSG00000037742 721.23 7492.77 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
11. mt-Nd3 ENSMUSG00000064360 673.68 6998.78 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. Actb ENSMUSG00000029580 598.12 6213.80 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. mt-Nd2 ENSMUSG00000064345 593.37 6164.45 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
14. Hbb-y ENSMUSG00000052187 502.49 5220.31 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
15. H19 ENSMUSG00000000031 472.90 4912.90 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
16. Gm13340 ENSMUSG00000083563 382.02 3968.76 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
17. Rpsa ENSMUSG00000032518 367.75 3820.51 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
18. Mdk ENSMUSG00000027239 339.75 3529.62 midkine [Source:MGI Symbol;Acc:MGI:96949]
19. Hba-a1 ENSMUSG00000069919 315.97 3282.58 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
20. Cfl1 ENSMUSG00000056201 309.10 3211.20 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
21. Tubb5 ENSMUSG00000001525 295.89 3073.97 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
22. Tmsb4x ENSMUSG00000049775 291.14 3024.62 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
23. Npm1 ENSMUSG00000057113 261.55 2717.21 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. mt-Nd5 ENSMUSG00000064367 258.38 2684.28 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
25. Tuba1b ENSMUSG00000023004 254.68 2645.84 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
26. Tubb2b ENSMUSG00000045136 254.15 2640.33 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
27. Igf2 ENSMUSG00000048583 248.87 2585.48 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
28. Pkm ENSMUSG00000032294 247.81 2574.47 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
29. Eif4g2 ENSMUSG00000005610 247.28 2568.96 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
30. Hba-x ENSMUSG00000055609 233.54 2426.22 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
31. Nedd4 ENSMUSG00000032216 230.90 2398.79 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
32. Ubb ENSMUSG00000019505 228.26 2371.37 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
33. Tpt1 ENSMUSG00000060126 225.62 2343.94 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
34. Set ENSMUSG00000054766 219.80 2283.48 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
35. Rpl23 ENSMUSG00000071415 208.71 2168.26 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
36. Rpl4 ENSMUSG00000032399 208.71 2168.26 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
37. Hsp90aa1 ENSMUSG00000021270 188.10 1954.15 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
38. Tuba1a ENSMUSG00000072235 188.10 1954.15 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
39. Chchd2 ENSMUSG00000070493 185.46 1926.72 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
40. Eif5a ENSMUSG00000078812 180.18 1871.87 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
41. Cdkn1c ENSMUSG00000037664 173.31 1800.50 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
42. Gm10800 ENSMUSG00000075014 171.19 1778.47 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
43. Map1b ENSMUSG00000052727 163.80 1701.70 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
44. Rps26 ENSMUSG00000025362 162.74 1690.69 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
45. Hsp90ab1 ENSMUSG00000023944 162.21 1685.18 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
46. Hmga2 ENSMUSG00000056758 160.63 1668.77 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
47. Eef1b2 ENSMUSG00000025967 159.04 1652.25 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
48. Crabp1 ENSMUSG00000032291 158.51 1646.74 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
49. Hba-a2 ENSMUSG00000069917 156.93 1630.33 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
50. Hnrnpc ENSMUSG00000060373 149.53 1553.45 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
51. Rps20 ENSMUSG00000028234 147.42 1531.53 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
52. Ran ENSMUSG00000029430 139.49 1449.15 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
53. Atp5g3 ENSMUSG00000018770 138.43 1438.13 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
54. Rpl18a ENSMUSG00000045128 135.26 1405.20 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
55. Rps4x ENSMUSG00000031320 133.15 1383.28 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
56. Fkbp1a ENSMUSG00000032966 131.04 1361.36 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
57. Ndufa12 ENSMUSG00000020022 128.92 1339.33 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
58. Ywhab ENSMUSG00000018326 124.17 1289.99 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
59. mt-Rnr1 ENSMUSG00000064337 120.47 1251.55 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
60. Rps5 ENSMUSG00000012848 119.41 1240.54 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
61. Ybx1 ENSMUSG00000028639 118.36 1229.63 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
62. Rps3a1 ENSMUSG00000028081 117.83 1224.12 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
63. Hnrnpa2b1 ENSMUSG00000004980 116.24 1207.60 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
64. Marcks ENSMUSG00000069662 115.71 1202.10 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
65. Rplp1 ENSMUSG00000007892 115.19 1196.70 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
66. Paics ENSMUSG00000029247 114.66 1191.19 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
67. Hbb-bh1 ENSMUSG00000052217 112.02 1163.76 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
68. Rpl32 ENSMUSG00000057841 111.49 1158.26 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
69. Hmgn1 ENSMUSG00000040681 109.90 1141.74 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
70. Gm14303 ENSMUSG00000081344 107.79 1119.82 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
71. Pcbp1 ENSMUSG00000051695 107.79 1119.82 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
72. Banf1 ENSMUSG00000024844 106.20 1103.30 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
73. Cdk4 ENSMUSG00000006728 105.68 1097.90 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
74. Basp1 ENSMUSG00000045763 104.09 1081.38 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
75. Cd24a ENSMUSG00000047139 104.09 1081.38 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
76. Ddx5 ENSMUSG00000020719 104.09 1081.38 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
77. Myl6 ENSMUSG00000090841 100.92 1048.45 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
78. U2af2 ENSMUSG00000030435 100.39 1042.94 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
79. Rrm2 ENSMUSG00000020649 99.33 1031.93 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
80. Pabpc1 ENSMUSG00000022283 97.75 1015.51 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
81. Tecr ENSMUSG00000031708 97.22 1010.01 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
82. Vim ENSMUSG00000026728 97.22 1010.01 vimentin [Source:MGI Symbol;Acc:MGI:98932]
83. Cox8a ENSMUSG00000035885 96.69 1004.50 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
84. Gm5805 ENSMUSG00000061848 96.16 998.99 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
85. Rpl37 ENSMUSG00000041841 96.16 998.99 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
86. Grb10 ENSMUSG00000020176 94.58 982.58 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
87. Ldha ENSMUSG00000063229 94.05 977.07 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
88. Mapre1 ENSMUSG00000027479 94.05 977.07 microtubule-associated protein, RP/EB family, member 1 [Source:MGI Symbol;Acc:MGI:891995]
89. Srsf3 ENSMUSG00000071172 93.52 971.57 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
90. Eef2 ENSMUSG00000034994 90.88 944.14 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
91. Sub1 ENSMUSG00000022205 90.88 944.14 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
92. Tmsb10 ENSMUSG00000079523 90.35 938.64 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
93. Ywhag ENSMUSG00000051391 90.35 938.64 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide [Source:MGI Symbol;Acc:MGI:108109]
94. H3f3b ENSMUSG00000016559 89.82 933.13 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
95. Tubb3 ENSMUSG00000062380 89.30 927.73 tubulin, beta 3 class III [Source:MGI Symbol;Acc:MGI:107813]
96. Calm1 ENSMUSG00000001175 88.24 916.72 calmodulin 1 [Source:MGI Symbol;Acc:MGI:88251]
97. Ccnd2 ENSMUSG00000000184 88.24 916.72 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
98. Rps15 ENSMUSG00000063457 87.18 905.70 ribosomal protein S15 [Source:MGI Symbol;Acc:MGI:98117]
99. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 85.60 889.29 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
100. Fkbp4 ENSMUSG00000030357 85.07 883.78 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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