Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s14.

Sample reads: 96,256. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4328.03 44963.97 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 2932.09 30461.53 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 1915.92 19904.52 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 1754.99 18232.62 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 1719.63 17865.26 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 1581.26 16427.73 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1038.73 10791.38 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr2 ENSMUSG00000064339 967.41 10050.44 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. Eef1a1 ENSMUSG00000037742 708.33 7358.85 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
10. Actb ENSMUSG00000029580 622.99 6472.25 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. mt-Nd2 ENSMUSG00000064345 586.42 6092.33 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
12. mt-Nd3 ENSMUSG00000064360 580.93 6035.29 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
13. mt-Co3 ENSMUSG00000064358 569.96 5921.32 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
14. H19 ENSMUSG00000000031 452.92 4705.39 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
15. Hbb-y ENSMUSG00000052187 436.46 4534.39 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
16. Rpsa ENSMUSG00000032518 405.98 4217.73 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
17. Mdk ENSMUSG00000027239 371.85 3863.16 midkine [Source:MGI Symbol;Acc:MGI:96949]
18. Tmsb4x ENSMUSG00000049775 329.17 3419.75 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
19. Gm13340 ENSMUSG00000083563 322.47 3350.15 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. Hba-x ENSMUSG00000055609 299.30 3109.43 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
21. Cfl1 ENSMUSG00000056201 297.48 3090.52 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
22. Tubb5 ENSMUSG00000001525 283.46 2944.87 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
23. Tuba1b ENSMUSG00000023004 282.85 2938.53 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. Pkm ENSMUSG00000032294 270.65 2811.79 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
25. Gm10800 ENSMUSG00000075014 251.15 2609.20 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
26. Tuba1a ENSMUSG00000072235 232.25 2412.85 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
27. Tpt1 ENSMUSG00000060126 231.03 2400.17 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
28. Ubb ENSMUSG00000019505 231.03 2400.17 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
29. Tubb2b ENSMUSG00000045136 229.20 2381.16 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
30. Npm1 ENSMUSG00000057113 222.50 2311.56 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
31. Eif4g2 ENSMUSG00000005610 220.67 2292.54 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
32. Rpl4 ENSMUSG00000032399 219.45 2279.87 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
33. Set ENSMUSG00000054766 213.96 2222.83 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
34. mt-Nd5 ENSMUSG00000064367 211.53 2197.59 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
35. Nedd4 ENSMUSG00000032216 210.92 2191.25 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
36. Hba-a1 ENSMUSG00000069919 205.43 2134.22 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
37. Hsp90ab1 ENSMUSG00000023944 202.38 2102.53 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
38. Igf2 ENSMUSG00000048583 196.90 2045.60 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
39. Rpl23 ENSMUSG00000071415 194.46 2020.25 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
40. Atp5g3 ENSMUSG00000018770 192.63 2001.24 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
41. Eif5a ENSMUSG00000078812 185.92 1931.53 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
42. Cdkn1c ENSMUSG00000037664 178.61 1855.58 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
43. Map1b ENSMUSG00000052727 177.39 1842.91 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
44. Rps20 ENSMUSG00000028234 176.17 1830.23 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
45. Chchd2 ENSMUSG00000070493 174.95 1817.56 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
46. Hsp90aa1 ENSMUSG00000021270 171.90 1785.87 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
47. Fkbp1a ENSMUSG00000032966 167.64 1741.61 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
48. Eef1b2 ENSMUSG00000025967 152.40 1583.29 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
49. Hnrnpc ENSMUSG00000060373 149.96 1557.94 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
50. Ybx1 ENSMUSG00000028639 149.96 1557.94 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
51. Rpl18a ENSMUSG00000045128 144.47 1500.90 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
52. Banf1 ENSMUSG00000024844 137.77 1431.29 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
53. Rps26 ENSMUSG00000025362 136.55 1418.62 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
54. Rps3a1 ENSMUSG00000028081 135.94 1412.28 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
55. Ran ENSMUSG00000029430 134.11 1393.27 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
56. Hmga2 ENSMUSG00000056758 133.50 1386.93 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
57. Cadm1 ENSMUSG00000032076 132.89 1380.60 cell adhesion molecule 1 [Source:MGI Symbol;Acc:MGI:1889272]
58. Trp53i11 ENSMUSG00000068735 129.23 1342.57 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
59. Rrm2 ENSMUSG00000020649 126.18 1310.89 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
60. Rplp1 ENSMUSG00000007892 125.57 1304.55 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
61. Tubb3 ENSMUSG00000062380 125.57 1304.55 tubulin, beta 3 class III [Source:MGI Symbol;Acc:MGI:107813]
62. Myl6 ENSMUSG00000090841 123.75 1285.64 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
63. Rps4x ENSMUSG00000031320 122.53 1272.97 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
64. Ywhab ENSMUSG00000018326 121.92 1266.63 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
65. Rps5 ENSMUSG00000012848 120.70 1253.95 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
66. Eef2 ENSMUSG00000034994 120.09 1247.62 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
67. U2af2 ENSMUSG00000030435 120.09 1247.62 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
68. Hnrnpa2b1 ENSMUSG00000004980 118.26 1228.60 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
69. Ywhae ENSMUSG00000020849 118.26 1228.60 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
70. Vim ENSMUSG00000026728 117.65 1222.27 vimentin [Source:MGI Symbol;Acc:MGI:98932]
71. Stmn1 ENSMUSG00000028832 113.38 1177.91 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
72. Rpl41 ENSMUSG00000093674 112.77 1171.57 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
73. Ndufa12 ENSMUSG00000020022 111.55 1158.89 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
74. Gm5805 ENSMUSG00000061848 110.94 1152.56 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
75. Crabp1 ENSMUSG00000032291 110.33 1146.22 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
76. Hmgn1 ENSMUSG00000040681 110.33 1146.22 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
77. Ldha ENSMUSG00000063229 109.72 1139.88 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
78. Pabpc1 ENSMUSG00000022283 109.72 1139.88 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
79. Ywhaz ENSMUSG00000022285 109.12 1133.65 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
80. Paics ENSMUSG00000029247 108.51 1127.31 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
81. Rpl32 ENSMUSG00000057841 108.51 1127.31 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
82. Pcbp1 ENSMUSG00000051695 106.68 1108.30 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
83. Hbb-bh1 ENSMUSG00000052217 104.85 1089.29 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
84. Marcks ENSMUSG00000069662 104.24 1082.95 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
85. Basp1 ENSMUSG00000045763 103.02 1070.28 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
86. Hba-a2 ENSMUSG00000069917 101.80 1057.60 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
87. Ccnd2 ENSMUSG00000000184 99.97 1038.59 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
88. Tecr ENSMUSG00000031708 99.97 1038.59 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
89. Ngfrap1 99.36 1032.25 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
90. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 99.36 1032.25 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
91. Fkbp4 ENSMUSG00000030357 96.31 1000.57 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
92. Sub1 ENSMUSG00000022205 95.70 994.23 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
93. Gm14303 ENSMUSG00000081344 94.49 981.66 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
94. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 93.88 975.32 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
95. Trim28 ENSMUSG00000005566 93.88 975.32 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
96. Cd24a ENSMUSG00000047139 93.27 968.98 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
97. Hnrnph1 ENSMUSG00000007850 91.44 949.97 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
98. Ywhag ENSMUSG00000051391 91.44 949.97 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, gamma polypeptide [Source:MGI Symbol;Acc:MGI:108109]
99. Rpl37 ENSMUSG00000041841 90.22 937.30 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
100. Scd2 ENSMUSG00000025203 89.61 930.96 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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