Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s13.

Sample reads: 96,247. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4037.76 41952.04 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3084.16 32044.21 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2259.84 23479.58 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 2195.84 22814.62 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Co2 ENSMUSG00000064354 1936.64 20121.55 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. mt-Nd4 ENSMUSG00000064363 1480.96 15387.07 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1352.96 14057.16 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr2 ENSMUSG00000064339 1243.52 12920.09 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. Eef1a1 ENSMUSG00000037742 750.08 7793.28 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
10. Actb ENSMUSG00000029580 657.92 6835.74 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. mt-Nd3 ENSMUSG00000064360 640.00 6649.56 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
12. mt-Nd2 ENSMUSG00000064345 608.00 6317.08 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
13. mt-Co3 ENSMUSG00000064358 500.48 5199.95 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
14. Rpsa ENSMUSG00000032518 468.48 4867.47 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
15. Gm13340 ENSMUSG00000083563 382.08 3969.78 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
16. Tmsb4x ENSMUSG00000049775 359.68 3737.05 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
17. Mdk ENSMUSG00000027239 346.88 3604.06 midkine [Source:MGI Symbol;Acc:MGI:96949]
18. H19 ENSMUSG00000000031 338.56 3517.61 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
19. Tuba1b ENSMUSG00000023004 338.56 3517.61 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
20. Npm1 ENSMUSG00000057113 300.16 3118.64 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
21. mt-Nd5 ENSMUSG00000064367 295.68 3072.09 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
22. Hbb-y ENSMUSG00000052187 294.40 3058.80 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
23. Cfl1 ENSMUSG00000056201 275.84 2865.96 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
24. Nedd4 ENSMUSG00000032216 250.24 2599.98 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
25. Tubb5 ENSMUSG00000001525 250.24 2599.98 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
26. Pkm ENSMUSG00000032294 248.96 2586.68 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
27. Ubb ENSMUSG00000019505 229.76 2387.19 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
28. Tubb2b ENSMUSG00000045136 223.36 2320.69 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
29. Eif4g2 ENSMUSG00000005610 221.44 2300.75 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
30. Tuba1a ENSMUSG00000072235 216.32 2247.55 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
31. Gm10800 ENSMUSG00000075014 211.20 2194.35 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
32. Rpl4 ENSMUSG00000032399 211.20 2194.35 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
33. Set ENSMUSG00000054766 209.28 2174.40 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
34. Hsp90aa1 ENSMUSG00000021270 197.76 2054.71 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
35. Rps26 ENSMUSG00000025362 190.72 1981.57 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
36. Tpt1 ENSMUSG00000060126 187.52 1948.32 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
37. Eif5a ENSMUSG00000078812 181.12 1881.82 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
38. Hsp90ab1 ENSMUSG00000023944 178.56 1855.23 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
39. Rpl23 ENSMUSG00000071415 178.56 1855.23 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
40. Chchd2 ENSMUSG00000070493 177.28 1841.93 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
41. Igf2 ENSMUSG00000048583 176.00 1828.63 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
42. Rpl18a ENSMUSG00000045128 172.16 1788.73 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
43. Hnrnpc ENSMUSG00000060373 161.92 1682.34 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
44. Eef1b2 ENSMUSG00000025967 159.36 1655.74 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
45. Ybx1 ENSMUSG00000028639 154.24 1602.54 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
46. Rplp1 ENSMUSG00000007892 153.60 1595.89 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
47. Atp5g3 ENSMUSG00000018770 151.68 1575.94 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
48. Hba-a1 ENSMUSG00000069919 151.68 1575.94 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
49. Rps20 ENSMUSG00000028234 151.04 1569.30 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
50. Rrm2 ENSMUSG00000020649 144.64 1502.80 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
51. Hmga2 ENSMUSG00000056758 140.16 1456.25 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
52. Cadm1 ENSMUSG00000032076 136.96 1423.00 cell adhesion molecule 1 [Source:MGI Symbol;Acc:MGI:1889272]
53. Fkbp1a ENSMUSG00000032966 133.76 1389.76 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
54. Rps3a1 ENSMUSG00000028081 132.48 1376.46 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
55. Stmn1 ENSMUSG00000028832 132.48 1376.46 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
56. Ran ENSMUSG00000029430 131.20 1363.16 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
57. Map1b ENSMUSG00000052727 126.72 1316.61 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
58. Grb10 ENSMUSG00000020176 126.08 1309.96 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
59. mt-Rnr1 ENSMUSG00000064337 126.08 1309.96 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
60. Tubb3 ENSMUSG00000062380 124.16 1290.01 tubulin, beta 3 class III [Source:MGI Symbol;Acc:MGI:107813]
61. Hba-x ENSMUSG00000055609 123.52 1283.36 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
62. Ywhab ENSMUSG00000018326 122.88 1276.71 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
63. Rps4x ENSMUSG00000031320 122.24 1270.07 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
64. Gm5805 ENSMUSG00000061848 120.32 1250.12 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
65. Paics ENSMUSG00000029247 120.32 1250.12 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
66. Pabpc1 ENSMUSG00000022283 116.48 1210.22 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
67. Cox8a ENSMUSG00000035885 114.56 1190.27 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
68. Hnrnpa2b1 ENSMUSG00000004980 114.56 1190.27 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
69. Rpl32 ENSMUSG00000057841 113.92 1183.62 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
70. Pcbp1 ENSMUSG00000051695 113.28 1176.97 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
71. Rps5 ENSMUSG00000012848 113.28 1176.97 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
72. Hmgn1 ENSMUSG00000040681 112.64 1170.32 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
73. Ldha ENSMUSG00000063229 110.72 1150.37 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
74. Cdkn1c ENSMUSG00000037664 110.08 1143.72 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
75. Trp53i11 ENSMUSG00000068735 107.52 1117.13 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
76. Sub1 ENSMUSG00000022205 104.32 1083.88 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
77. Banf1 ENSMUSG00000024844 103.68 1077.23 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
78. Ddx5 ENSMUSG00000020719 102.40 1063.93 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
79. Myl6 ENSMUSG00000090841 101.12 1050.63 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
80. Vim ENSMUSG00000026728 100.48 1043.98 vimentin [Source:MGI Symbol;Acc:MGI:98932]
81. Ndufa12 ENSMUSG00000020022 99.84 1037.33 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
82. Tecr ENSMUSG00000031708 98.56 1024.03 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
83. Ywhaz ENSMUSG00000022285 97.92 1017.38 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
84. Trim28 ENSMUSG00000005566 97.28 1010.73 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
85. Rpl8 ENSMUSG00000003970 96.00 997.43 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
86. Anp32b ENSMUSG00000028333 95.36 990.78 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
87. Gm14303 ENSMUSG00000081344 94.72 984.13 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
88. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 94.72 984.13 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
89. U2af2 ENSMUSG00000030435 93.44 970.84 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
90. Ywhae ENSMUSG00000020849 91.52 950.89 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
91. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 90.88 944.24 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
92. Fscn1 ENSMUSG00000029581 89.60 930.94 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
93. Hnrnpa0 ENSMUSG00000007836 89.60 930.94 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
94. Mapre1 ENSMUSG00000027479 89.60 930.94 microtubule-associated protein, RP/EB family, member 1 [Source:MGI Symbol;Acc:MGI:891995]
95. Rpl41 ENSMUSG00000093674 89.60 930.94 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
96. Rps9 ENSMUSG00000006333 88.96 924.29 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
97. Slc25a5 ENSMUSG00000016319 88.96 924.29 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 5 [Source:MGI Symbol;Acc:MGI:1353496]
98. Ywhaq ENSMUSG00000076432 88.96 924.29 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta [Source:MGI Symbol;Acc:MGI:891963]
99. Eef2 ENSMUSG00000034994 88.32 917.64 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
100. Basp1 ENSMUSG00000045763 87.68 910.99 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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