Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s12.

Sample reads: 96,249. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4332.74 45015.88 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 3401.10 35336.42 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 2373.40 24658.92 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Co2 ENSMUSG00000064354 1932.84 20081.63 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd4 ENSMUSG00000064363 1802.00 18722.24 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Nd1 ENSMUSG00000064341 1702.62 17689.71 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co1 ENSMUSG00000064351 1262.06 13112.43 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd3 ENSMUSG00000064360 708.87 7364.95 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
9. Eef1a1 ENSMUSG00000037742 691.48 7184.27 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
10. mt-Rnr2 ENSMUSG00000064339 657.53 6831.54 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
11. Actb ENSMUSG00000029580 638.48 6633.62 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. mt-Co3 ENSMUSG00000064358 630.20 6547.59 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. mt-Nd2 ENSMUSG00000064345 624.40 6487.33 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
14. Rpsa ENSMUSG00000032518 443.05 4603.16 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
15. Mdk ENSMUSG00000027239 396.67 4121.28 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. Gm13340 ENSMUSG00000083563 338.70 3518.99 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
17. Pkm ENSMUSG00000032294 335.39 3484.60 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
18. Cfl1 ENSMUSG00000056201 321.31 3338.32 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
19. Tuba1b ENSMUSG00000023004 304.75 3166.26 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
20. Tubb5 ENSMUSG00000001525 302.26 3140.39 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
21. Npm1 ENSMUSG00000057113 291.50 3028.60 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
22. Tubb2b ENSMUSG00000045136 286.53 2976.96 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
23. Tmsb4x ENSMUSG00000049775 284.87 2959.71 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
24. mt-Nd5 ENSMUSG00000064367 279.91 2908.18 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
25. Hbb-y ENSMUSG00000052187 275.76 2865.06 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
26. H19 ENSMUSG00000000031 261.69 2718.88 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
27. Eif4g2 ENSMUSG00000005610 251.75 2615.61 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
28. Ubb ENSMUSG00000019505 240.16 2495.19 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
29. Tuba1a ENSMUSG00000072235 231.87 2409.06 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
30. Rpl4 ENSMUSG00000032399 209.52 2176.85 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
31. Eif5a ENSMUSG00000078812 195.44 2030.56 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
32. Nedd4 ENSMUSG00000032216 195.44 2030.56 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
33. Rplp1 ENSMUSG00000007892 195.44 2030.56 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
34. Hsp90ab1 ENSMUSG00000023944 187.98 1953.06 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
35. Hsp90aa1 ENSMUSG00000021270 183.84 1910.04 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
36. Tpt1 ENSMUSG00000060126 183.84 1910.04 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
37. Rps26 ENSMUSG00000025362 183.02 1901.52 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
38. Hba-a1 ENSMUSG00000069919 178.87 1858.41 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
39. Fkbp1a ENSMUSG00000032966 162.31 1686.35 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
40. Rps20 ENSMUSG00000028234 161.48 1677.73 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
41. Set ENSMUSG00000054766 158.17 1643.34 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
42. Hnrnpc ENSMUSG00000060373 156.52 1626.20 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
43. Rpl18a ENSMUSG00000045128 156.52 1626.20 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
44. Rpl23 ENSMUSG00000071415 156.52 1626.20 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
45. Map1b ENSMUSG00000052727 149.89 1557.31 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
46. Rps4x ENSMUSG00000031320 149.89 1557.31 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
47. Hba-x ENSMUSG00000055609 149.06 1548.69 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
48. Pcbp1 ENSMUSG00000051695 144.09 1497.05 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
49. Ywhab ENSMUSG00000018326 142.44 1479.91 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
50. Chchd2 ENSMUSG00000070493 141.61 1471.29 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
51. Eef1b2 ENSMUSG00000025967 141.61 1471.29 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
52. Ndufa12 ENSMUSG00000020022 141.61 1471.29 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
53. Rps9 ENSMUSG00000006333 133.33 1385.26 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
54. Ywhae ENSMUSG00000020849 130.02 1350.87 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
55. Trp53i11 ENSMUSG00000068735 127.53 1325.00 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
56. Tubb3 ENSMUSG00000062380 127.53 1325.00 tubulin, beta 3 class III [Source:MGI Symbol;Acc:MGI:107813]
57. Banf1 ENSMUSG00000024844 125.87 1307.75 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
58. Paics ENSMUSG00000029247 125.87 1307.75 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
59. Cdkn1c ENSMUSG00000037664 124.22 1290.61 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
60. Rps3a1 ENSMUSG00000028081 123.39 1281.99 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
61. Ybx1 ENSMUSG00000028639 123.39 1281.99 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
62. Ran ENSMUSG00000029430 119.25 1238.97 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
63. Rps5 ENSMUSG00000012848 116.77 1213.21 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
64. Gm14303 ENSMUSG00000081344 115.94 1204.58 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
65. Hmgn1 ENSMUSG00000040681 115.94 1204.58 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
66. Vim ENSMUSG00000026728 115.94 1204.58 vimentin [Source:MGI Symbol;Acc:MGI:98932]
67. Trim28 ENSMUSG00000005566 115.11 1195.96 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
68. Cadm1 ENSMUSG00000032076 113.45 1178.71 cell adhesion molecule 1 [Source:MGI Symbol;Acc:MGI:1889272]
69. Cd24a ENSMUSG00000047139 111.80 1161.57 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
70. Ywhaz ENSMUSG00000022285 110.97 1152.95 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, zeta polypeptide [Source:MGI Symbol;Acc:MGI:109484]
71. Atp5g3 ENSMUSG00000018770 109.31 1135.70 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
72. Igf2 ENSMUSG00000048583 109.31 1135.70 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
73. Cdk4 ENSMUSG00000006728 108.48 1127.07 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
74. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 108.48 1127.07 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
75. Rpl32 ENSMUSG00000057841 107.66 1118.56 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
76. Gm10800 ENSMUSG00000075014 106.83 1109.93 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
77. Grb10 ENSMUSG00000020176 106.83 1109.93 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
78. Rpl37 ENSMUSG00000041841 106.00 1101.31 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
79. Eef2 ENSMUSG00000034994 105.17 1092.68 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
80. Gm5805 ENSMUSG00000061848 104.34 1084.06 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
81. Fscn1 ENSMUSG00000029581 103.52 1075.54 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
82. Dpysl2 ENSMUSG00000022048 102.69 1066.92 dihydropyrimidinase-like 2 [Source:MGI Symbol;Acc:MGI:1349763]
83. Fkbp4 ENSMUSG00000030357 102.69 1066.92 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
84. Tmsb10 ENSMUSG00000079523 102.69 1066.92 thymosin, beta 10 [Source:MGI Symbol;Acc:MGI:109146]
85. Cox8a ENSMUSG00000035885 101.03 1049.67 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
86. Jund ENSMUSG00000071076, ENSMUSG00000110974 101.03 1049.67 jun D proto-oncogene [Source:MGI Symbol;Acc:MGI:96648]
87. Myl6 ENSMUSG00000090841 101.03 1049.67 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
88. Pabpc1 ENSMUSG00000022283 100.20 1041.05 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
89. Scd2 ENSMUSG00000025203 100.20 1041.05 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
90. Hmga2 ENSMUSG00000056758 98.55 1023.91 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
91. Rpl39-ps ENSMUSG00000036305 98.55 1023.91 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
92. Ndufc2 ENSMUSG00000030647 97.72 1015.28 NADH:ubiquinone oxidoreductase subunit C2 [Source:MGI Symbol;Acc:MGI:1344370]
93. Ldha ENSMUSG00000063229 96.89 1006.66 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
94. Ddx5 ENSMUSG00000020719 95.23 989.41 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
95. Stmn1 ENSMUSG00000028832 94.41 980.89 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
96. Hnrnpa2b1 ENSMUSG00000004980 91.92 955.02 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
97. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 91.92 955.02 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
98. Srsf3 ENSMUSG00000071172 91.09 946.40 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
99. Gm14586 ENSMUSG00000083621 90.27 937.88 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
100. Hnrnpk ENSMUSG00000021546 88.61 920.63 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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