Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s10.

Sample reads: 96,232. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 4492.18 46680.59 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 2711.92 28180.98 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 1750.88 18194.31 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd4 ENSMUSG00000064363 1694.30 17606.36 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Nd1 ENSMUSG00000064341 1511.35 15705.23 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
6. mt-Co2 ENSMUSG00000064354 1149.13 11941.21 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Co1 ENSMUSG00000064351 1119.74 11635.80 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr2 ENSMUSG00000064339 928.71 9650.71 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. Eef1a1 ENSMUSG00000037742 766.33 7963.34 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
10. mt-Nd2 ENSMUSG00000064345 574.56 5970.55 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
11. Actb ENSMUSG00000029580 549.58 5710.97 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. mt-Co3 ENSMUSG00000064358 451.13 4687.93 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. Rpsa ENSMUSG00000032518 443.78 4611.55 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
14. mt-Nd3 ENSMUSG00000064360 427.62 4443.62 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
15. Gm10800 ENSMUSG00000075014 407.04 4229.77 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
16. Mdk ENSMUSG00000027239 400.43 4161.08 midkine [Source:MGI Symbol;Acc:MGI:96949]
17. mt-Nd5 ENSMUSG00000064367 353.41 3672.47 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
18. Hbb-y ENSMUSG00000052187 349.00 3626.64 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
19. Gm13340 ENSMUSG00000083563 345.33 3588.50 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. Crabp1 ENSMUSG00000032291 341.65 3550.26 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
21. Tuba1b ENSMUSG00000023004 282.87 2939.45 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
22. Npm1 ENSMUSG00000057113 282.14 2931.86 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
23. Rrm2 ENSMUSG00000020649 277.73 2886.04 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
24. Cfl1 ENSMUSG00000056201 272.59 2832.63 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
25. Tuba1a ENSMUSG00000072235 260.83 2710.42 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
26. Eif4g2 ENSMUSG00000005610 255.69 2657.01 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
27. Tubb2b ENSMUSG00000045136 255.69 2657.01 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
28. Nedd4 ENSMUSG00000032216 252.75 2626.46 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
29. Tpt1 ENSMUSG00000060126 244.67 2542.49 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
30. Hba-a1 ENSMUSG00000069919 240.99 2504.25 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
31. Set ENSMUSG00000054766 235.12 2443.25 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
32. Hba-x ENSMUSG00000055609 232.18 2412.70 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
33. Pkm ENSMUSG00000032294 230.71 2397.43 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
34. Eif5a ENSMUSG00000078812 227.77 2366.88 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
35. Tmsb4x ENSMUSG00000049775 227.03 2359.19 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
36. Tubb5 ENSMUSG00000001525 226.30 2351.60 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
37. Hsp90ab1 ENSMUSG00000023944 223.36 2321.05 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
38. Ubb ENSMUSG00000019505 223.36 2321.05 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
39. Chchd2 ENSMUSG00000070493 188.83 1962.23 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
40. Hsp90aa1 ENSMUSG00000021270 185.89 1931.68 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
41. H19 ENSMUSG00000000031 183.68 1908.71 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
42. Rpl4 ENSMUSG00000032399 183.68 1908.71 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
43. Ybx1 ENSMUSG00000028639 178.54 1855.30 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
44. Map1b ENSMUSG00000052727 177.07 1840.03 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
45. Ran ENSMUSG00000029430 168.25 1748.37 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
46. Paics ENSMUSG00000029247 160.17 1664.41 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
47. Rpl23 ENSMUSG00000071415 157.97 1641.55 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
48. Atp5g3 ENSMUSG00000018770 152.83 1588.14 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
49. Rps20 ENSMUSG00000028234 152.83 1588.14 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
50. Hnrnpc ENSMUSG00000060373 150.62 1565.17 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
51. Pcbp1 ENSMUSG00000051695 149.15 1549.90 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
52. Banf1 ENSMUSG00000024844 144.01 1496.48 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
53. Eef1b2 ENSMUSG00000025967 142.54 1481.21 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
54. Rps26 ENSMUSG00000025362 135.93 1412.52 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
55. Sox2 ENSMUSG00000074637 130.78 1359.00 SRY (sex determining region Y)-box 2 [Source:MGI Symbol;Acc:MGI:98364]
56. Rpl18a ENSMUSG00000045128 130.05 1351.42 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
57. Rplp1 ENSMUSG00000007892 127.11 1320.87 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
58. Marcksl1 ENSMUSG00000047945 126.37 1313.18 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
59. Hmgn1 ENSMUSG00000040681 125.64 1305.59 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
60. Rps3a1 ENSMUSG00000028081 124.17 1290.32 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
61. Rps4x ENSMUSG00000031320 124.17 1290.32 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
62. Anp32b ENSMUSG00000028333 119.76 1244.49 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
63. Trim28 ENSMUSG00000005566 119.76 1244.49 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
64. Ywhae ENSMUSG00000020849 119.03 1236.90 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
65. Vim ENSMUSG00000026728 116.82 1213.94 vimentin [Source:MGI Symbol;Acc:MGI:98932]
66. Ccnd2 ENSMUSG00000000184 114.62 1191.08 cyclin D2 [Source:MGI Symbol;Acc:MGI:88314]
67. Hnrnpa2b1 ENSMUSG00000004980 113.88 1183.39 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
68. Hba-a2 ENSMUSG00000069917 113.15 1175.80 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
69. Pabpc1 ENSMUSG00000022283 113.15 1175.80 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
70. Fkbp1a ENSMUSG00000032966 112.41 1168.11 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
71. Msi1 ENSMUSG00000054256 110.95 1152.94 musashi RNA-binding protein 1 [Source:MGI Symbol;Acc:MGI:107376]
72. Hnrnph1 ENSMUSG00000007850 110.21 1145.25 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
73. Ndufa12 ENSMUSG00000020022 109.48 1137.66 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
74. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 108.74 1129.97 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
75. Ldha ENSMUSG00000063229 108.74 1129.97 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
76. Cdk4 ENSMUSG00000006728 107.27 1114.70 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
77. Trp53i11 ENSMUSG00000068735 107.27 1114.70 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
78. Gm17132 ENSMUSG00000061331 106.54 1107.11 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
79. Rpl32 ENSMUSG00000057841 105.80 1099.42 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
80. Grb10 ENSMUSG00000020176 105.07 1091.84 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
81. Rps5 ENSMUSG00000012848 105.07 1091.84 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
82. Ywhab ENSMUSG00000018326 104.33 1084.15 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
83. Hnrnpa0 ENSMUSG00000007836 102.86 1068.87 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
84. Fscn1 ENSMUSG00000029581 102.13 1061.29 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
85. Marcks ENSMUSG00000069662 99.92 1038.32 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
86. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 99.92 1038.32 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
87. Stmn1 ENSMUSG00000028832 99.92 1038.32 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
88. 2810417H13Rik 99.19 1030.74 RIKEN cDNA 2810417H13 gene
89. Top2a ENSMUSG00000020914 98.45 1023.05 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
90. U2af2 ENSMUSG00000030435 97.72 1015.46 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
91. Fkbp4 ENSMUSG00000030357 96.99 1007.87 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
92. Plagl1 ENSMUSG00000019817 96.99 1007.87 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
93. Zic1 ENSMUSG00000032368 96.99 1007.87 zinc finger protein of the cerebellum 1 [Source:MGI Symbol;Acc:MGI:106683]
94. Ranbp1 ENSMUSG00000005732, ENSMUSG00000099164 96.25 1000.18 RAN binding protein 1 [Source:MGI Symbol;Acc:MGI:96269]
95. Gm14303 ENSMUSG00000081344 95.52 992.60 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
96. Rps9 ENSMUSG00000006333 95.52 992.60 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
97. Srsf3 ENSMUSG00000071172 95.52 992.60 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
98. Sub1 ENSMUSG00000022205 95.52 992.60 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
99. Jund ENSMUSG00000071076, ENSMUSG00000110974 94.78 984.91 jun D proto-oncogene [Source:MGI Symbol;Acc:MGI:96648]
100. Cox8a ENSMUSG00000035885 91.84 954.36 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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