Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_3, section s1.

Sample reads: 96,246. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4208.61 43727.78 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Nd4 ENSMUSG00000064363 2956.05 30713.59 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
3. mt-Atp6 ENSMUSG00000064357 2805.74 29151.85 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Co1 ENSMUSG00000064351 2054.20 21343.30 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
5. Ptma ENSMUSG00000026238 1853.79 19261.02 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
6. mt-Nd1 ENSMUSG00000064341 1753.59 18219.93 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
7. mt-Co2 ENSMUSG00000064354 1452.97 15096.47 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
8. mt-Rnr2 ENSMUSG00000064339 1102.26 11452.57 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. mt-Nd2 ENSMUSG00000064345 1052.15 10931.92 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
10. Hbb-y ENSMUSG00000052187 951.95 9890.83 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
11. mt-Co3 ENSMUSG00000064358 851.74 8849.64 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. Gm13340 ENSMUSG00000083563 801.64 8329.10 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
13. mt-Nd5 ENSMUSG00000064367 801.64 8329.10 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
14. Rpsa ENSMUSG00000032518 751.54 7808.56 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
15. Cfl1 ENSMUSG00000056201 651.33 6767.37 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
16. Map1b ENSMUSG00000052727 651.33 6767.37 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
17. Hba-a1 ENSMUSG00000069919 551.13 5726.28 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
18. Eef1a1 ENSMUSG00000037742 450.92 4685.09 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
19. Hba-x ENSMUSG00000055609 450.92 4685.09 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
20. Actb ENSMUSG00000029580 400.82 4164.55 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
21. H19 ENSMUSG00000000031 400.82 4164.55 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
22. Mdk ENSMUSG00000027239 400.82 4164.55 midkine [Source:MGI Symbol;Acc:MGI:96949]
23. Pkm ENSMUSG00000032294 400.82 4164.55 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
24. Gm10800 ENSMUSG00000075014 350.72 3644.01 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
25. Ckb ENSMUSG00000001270 300.62 3123.46 creatine kinase, brain [Source:MGI Symbol;Acc:MGI:88407]
26. Cox8a ENSMUSG00000035885 300.62 3123.46 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
27. Hsp90aa1 ENSMUSG00000021270 300.62 3123.46 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
28. Tuba1a ENSMUSG00000072235 300.62 3123.46 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
29. Tuba1b ENSMUSG00000023004 300.62 3123.46 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
30. Hbb-bt ENSMUSG00000073940 250.51 2602.82 hemoglobin, beta adult t chain [Source:MGI Symbol;Acc:MGI:5474850]
31. Marcks ENSMUSG00000069662 250.51 2602.82 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
32. Rpl23 ENSMUSG00000071415 250.51 2602.82 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
33. Snrpb ENSMUSG00000027404 250.51 2602.82 small nuclear ribonucleoprotein B [Source:MGI Symbol;Acc:MGI:98342]
34. Trp53i11 ENSMUSG00000068735 250.51 2602.82 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
35. Eif5a ENSMUSG00000078812 200.41 2082.28 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
36. Grb10 ENSMUSG00000020176 200.41 2082.28 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
37. Hba-a2 ENSMUSG00000069917 200.41 2082.28 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
38. Lamp1 ENSMUSG00000031447 200.41 2082.28 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
39. Npm1 ENSMUSG00000057113 200.41 2082.28 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
40. Pbx1 ENSMUSG00000052534 200.41 2082.28 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
41. Rpl21 ENSMUSG00000041453 200.41 2082.28 ribosomal protein L21 [Source:MGI Symbol;Acc:MGI:1278340]
42. Slc25a4 ENSMUSG00000031633 200.41 2082.28 solute carrier family 25 (mitochondrial carrier, adenine nucleotide translocator), member 4 [Source:MGI Symbol;Acc:MGI:1353495]
43. Tspan3 ENSMUSG00000032324 200.41 2082.28 tetraspanin 3 [Source:MGI Symbol;Acc:MGI:1928098]
44. Ywhae ENSMUSG00000020849 200.41 2082.28 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
45. mt-Nd3 ENSMUSG00000064360 200.41 2082.28 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
46. 2310036O22Rik 150.31 1561.73 RIKEN cDNA 2310036O22 gene, transcript variant X1
47. Anp32b ENSMUSG00000028333 150.31 1561.73 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
48. Atp5a1 ENSMUSG00000025428, ENSMUSG00000116276 150.31 1561.73 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 [Source:MGI Symbol;Acc:MGI:88115]
49. Btf3 ENSMUSG00000021660 150.31 1561.73 basic transcription factor 3 [Source:MGI Symbol;Acc:MGI:1202875]
50. Calm2 ENSMUSG00000036438 150.31 1561.73 calmodulin 2 [Source:MGI Symbol;Acc:MGI:103250]
51. Cd24a ENSMUSG00000047139 150.31 1561.73 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
52. Cdc16 ENSMUSG00000038416 150.31 1561.73 CDC16 cell division cycle 16 [Source:MGI Symbol;Acc:MGI:1917207]
53. Dpysl4 ENSMUSG00000025478, ENSMUSG00000111393 150.31 1561.73 dihydropyrimidinase-like 4 [Source:MGI Symbol;Acc:MGI:1349764]
54. Eif4g2 ENSMUSG00000005610 150.31 1561.73 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
55. Gm26870 ENSMUSG00000097312 150.31 1561.73 predicted gene, 26870 [Source:MGI Symbol;Acc:MGI:5477364]
56. Hbb-bs ENSMUSG00000052305 150.31 1561.73 hemoglobin, beta adult s chain [Source:MGI Symbol;Acc:MGI:5474852]
57. Hmgn1 ENSMUSG00000040681 150.31 1561.73 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
58. Hnrnpa1 ENSMUSG00000046434 150.31 1561.73 heterogeneous nuclear ribonucleoprotein A1 [Source:MGI Symbol;Acc:MGI:104820]
59. Hnrnpc ENSMUSG00000060373 150.31 1561.73 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
60. Hnrnpdl ENSMUSG00000029328 150.31 1561.73 heterogeneous nuclear ribonucleoprotein D-like [Source:MGI Symbol;Acc:MGI:1355299]
61. Hnrnpk ENSMUSG00000021546 150.31 1561.73 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
62. Hoxb5 ENSMUSG00000038700 150.31 1561.73 homeobox B5 [Source:MGI Symbol;Acc:MGI:96186]
63. Hsp90ab1 ENSMUSG00000023944 150.31 1561.73 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
64. Igfbp5 ENSMUSG00000026185 150.31 1561.73 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
65. Ipo9 ENSMUSG00000041879 150.31 1561.73 importin 9 [Source:MGI Symbol;Acc:MGI:1918944]
66. Itgb1 ENSMUSG00000025809 150.31 1561.73 integrin beta 1 (fibronectin receptor beta) [Source:MGI Symbol;Acc:MGI:96610]
67. Ndufb11 ENSMUSG00000031059 150.31 1561.73 NADH:ubiquinone oxidoreductase subunit B11 [Source:MGI Symbol;Acc:MGI:1349919]
68. Nmral1 ENSMUSG00000063445 150.31 1561.73 NmrA-like family domain containing 1 [Source:MGI Symbol;Acc:MGI:1915074]
69. Nono ENSMUSG00000031311 150.31 1561.73 non-POU-domain-containing, octamer binding protein [Source:MGI Symbol;Acc:MGI:1855692]
70. Notch3 ENSMUSG00000038146 150.31 1561.73 notch 3 [Source:MGI Symbol;Acc:MGI:99460]
71. Polr2m ENSMUSG00000032199 150.31 1561.73 polymerase (RNA) II (DNA directed) polypeptide M [Source:MGI Symbol;Acc:MGI:107282]
72. Rnd2 ENSMUSG00000001313 150.31 1561.73 Rho family GTPase 2 [Source:MGI Symbol;Acc:MGI:1338755]
73. Rpl31-ps8 ENSMUSG00000067870 150.31 1561.73 ribosomal protein L31, pseudogene 8 [Source:MGI Symbol;Acc:MGI:3647726]
74. Rpl41 ENSMUSG00000093674 150.31 1561.73 ribosomal protein L41 [Source:MGI Symbol;Acc:MGI:1915195]
75. Rps26 ENSMUSG00000025362 150.31 1561.73 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
76. Serbp1 ENSMUSG00000036371 150.31 1561.73 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
77. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 150.31 1561.73 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
78. Srsf7 ENSMUSG00000024097 150.31 1561.73 serine/arginine-rich splicing factor 7 [Source:MGI Symbol;Acc:MGI:1926232]
79. Ssbp3 ENSMUSG00000061887 150.31 1561.73 single-stranded DNA binding protein 3 [Source:MGI Symbol;Acc:MGI:1919725]
80. Sub1 ENSMUSG00000022205 150.31 1561.73 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
81. Tubb2b ENSMUSG00000045136 150.31 1561.73 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
82. Uba1 ENSMUSG00000001924 150.31 1561.73 ubiquitin-like modifier activating enzyme 1 [Source:MGI Symbol;Acc:MGI:98890]
83. Vim ENSMUSG00000026728 150.31 1561.73 vimentin [Source:MGI Symbol;Acc:MGI:98932]
84. mt-Rnr1 ENSMUSG00000064337 150.31 1561.73 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
85. 2810004N23Rik ENSMUSG00000031984 100.21 1041.19 RIKEN cDNA 2810004N23 gene [Source:MGI Symbol;Acc:MGI:1913773]
86. Actr1a ENSMUSG00000025228 100.21 1041.19 ARP1 actin-related protein 1A, centractin alpha [Source:MGI Symbol;Acc:MGI:1858964]
87. Amd1 ENSMUSG00000075232 100.21 1041.19 S-adenosylmethionine decarboxylase 1 [Source:MGI Symbol;Acc:MGI:88004]
88. Anapc2 ENSMUSG00000026965 100.21 1041.19 anaphase promoting complex subunit 2 [Source:MGI Symbol;Acc:MGI:2139135]
89. Ankrd11 ENSMUSG00000035569 100.21 1041.19 ankyrin repeat domain 11 [Source:MGI Symbol;Acc:MGI:1924337]
90. Anxa6 ENSMUSG00000018340 100.21 1041.19 annexin A6 [Source:MGI Symbol;Acc:MGI:88255]
91. Arih1 ENSMUSG00000025234 100.21 1041.19 ariadne RBR E3 ubiquitin protein ligase 1 [Source:MGI Symbol;Acc:MGI:1344363]
92. Arpc4 ENSMUSG00000079426 100.21 1041.19 actin related protein 2/3 complex, subunit 4 [Source:MGI Symbol;Acc:MGI:1915339]
93. Asah1 ENSMUSG00000031591 100.21 1041.19 N-acylsphingosine amidohydrolase 1 [Source:MGI Symbol;Acc:MGI:1277124]
94. Atp5g1 ENSMUSG00000006057 100.21 1041.19 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C1 (subunit 9) [Source:MGI Symbol;Acc:MGI:107653]
95. Atp5g3 ENSMUSG00000018770 100.21 1041.19 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
96. Bcl2l1 ENSMUSG00000007659 100.21 1041.19 BCL2-like 1 [Source:MGI Symbol;Acc:MGI:88139]
97. Bcr ENSMUSG00000009681 100.21 1041.19 breakpoint cluster region [Source:MGI Symbol;Acc:MGI:88141]
98. Blmh ENSMUSG00000020840 100.21 1041.19 bleomycin hydrolase [Source:MGI Symbol;Acc:MGI:1345186]
99. Btg1 ENSMUSG00000036478 100.21 1041.19 B cell translocation gene 1, anti-proliferative [Source:MGI Symbol;Acc:MGI:88215]
100. C1qbp ENSMUSG00000018446 100.21 1041.19 complement component 1, q subcomponent binding protein [Source:MGI Symbol;Acc:MGI:1194505]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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