Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Mouse data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Mouse_E11_5_slice_2, section s9.

Sample reads: 96,245. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 3132.09 32542.80 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 2865.50 29772.90 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Nd1 ENSMUSG00000064341 2040.87 21204.89 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
4. mt-Atp6 ENSMUSG00000064357 1894.02 19679.10 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Nd4 ENSMUSG00000064363 1660.56 17253.42 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Co2 ENSMUSG00000064354 1449.69 15062.46 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Co1 ENSMUSG00000064351 1138.67 11830.92 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr2 ENSMUSG00000064339 838.94 8716.69 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. Eef1a1 ENSMUSG00000037742 786.98 8176.82 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
10. Hbb-y ENSMUSG00000052187 705.64 7331.69 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
11. Actb ENSMUSG00000029580 515.87 5359.95 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. mt-Co3 ENSMUSG00000064358 484.24 5031.31 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. mt-Nd3 ENSMUSG00000064360 475.20 4937.39 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. mt-Nd2 ENSMUSG00000064345 420.98 4374.03 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
15. Mdk ENSMUSG00000027239 332.86 3458.46 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. Gm13340 ENSMUSG00000083563 323.07 3356.74 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
17. Hba-x ENSMUSG00000055609 306.51 3184.68 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
18. Tuba1b ENSMUSG00000023004 305.75 3176.78 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
19. Rpsa ENSMUSG00000032518 297.47 3090.75 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
20. Set ENSMUSG00000054766 272.62 2832.56 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
21. Ubb ENSMUSG00000019505 256.80 2668.18 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
22. Hba-a1 ENSMUSG00000069919 253.04 2629.12 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
23. Npm1 ENSMUSG00000057113 247.77 2574.36 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Ybx1 ENSMUSG00000028639 238.73 2480.43 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
25. Tubb2b ENSMUSG00000045136 233.46 2425.68 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
26. Tpt1 ENSMUSG00000060126 232.70 2417.78 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
27. Tmsb4x ENSMUSG00000049775 231.95 2409.99 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
28. Eif4g2 ENSMUSG00000005610 222.91 2316.06 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
29. Tubb5 ENSMUSG00000001525 219.15 2277.00 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
30. Hnrnpc ENSMUSG00000060373 210.86 2190.86 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
31. Cfl1 ENSMUSG00000056201 201.83 2097.04 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
32. Tuba1a ENSMUSG00000072235 198.82 2065.76 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
33. Pkm ENSMUSG00000032294 191.28 1987.42 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
34. Rpl4 ENSMUSG00000032399 190.53 1979.63 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
35. Ran ENSMUSG00000029430 189.78 1971.84 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
36. Rrm2 ENSMUSG00000020649 185.26 1924.87 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
37. Hsp90aa1 ENSMUSG00000021270 179.99 1870.12 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
38. H19 ENSMUSG00000000031 178.48 1854.43 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
39. Atp5g3 ENSMUSG00000018770 177.73 1846.64 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
40. Hsp90ab1 ENSMUSG00000023944 175.47 1823.16 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
41. Chchd2 ENSMUSG00000070493 167.94 1744.92 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
42. Hbb-bh1 ENSMUSG00000052217 165.68 1721.44 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
43. Nedd4 ENSMUSG00000032216 164.17 1705.75 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
44. Crabp1 ENSMUSG00000032291 161.16 1674.47 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
45. Eif5a ENSMUSG00000078812 161.16 1674.47 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
46. Banf1 ENSMUSG00000024844 160.41 1666.68 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
47. Vim ENSMUSG00000026728 159.65 1658.78 vimentin [Source:MGI Symbol;Acc:MGI:98932]
48. mt-Nd5 ENSMUSG00000064367 158.15 1643.20 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
49. U2af2 ENSMUSG00000030435 154.38 1604.03 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
50. Rpl18a ENSMUSG00000045128 153.63 1596.23 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
51. Rps20 ENSMUSG00000028234 146.10 1518.00 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
52. Map1b ENSMUSG00000052727 142.33 1478.83 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
53. Cdkn1c ENSMUSG00000037664 139.32 1447.55 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
54. Hnrnpa2b1 ENSMUSG00000004980 139.32 1447.55 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
55. Rps26 ENSMUSG00000025362 139.32 1447.55 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
56. Rps4x ENSMUSG00000031320 138.57 1439.76 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
57. Grb10 ENSMUSG00000020176 134.80 1400.59 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
58. Pcbp1 ENSMUSG00000051695 132.54 1377.11 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
59. Marcksl1 ENSMUSG00000047945 131.79 1369.31 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
60. Marcks ENSMUSG00000069662 128.02 1330.14 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
61. Rpl23 ENSMUSG00000071415 126.52 1314.56 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
62. Paics ENSMUSG00000029247 122.75 1275.39 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
63. Hba-a2 ENSMUSG00000069917 120.49 1251.91 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
64. Basp1 ENSMUSG00000045763 119.74 1244.11 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
65. Malat1 ENSMUSG00000092341 119.74 1244.11 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
66. Rps3a1 ENSMUSG00000028081 119.74 1244.11 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
67. Ldha ENSMUSG00000063229 118.23 1228.42 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
68. Pabpc1 ENSMUSG00000022283 118.23 1228.42 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
69. Gm14303 ENSMUSG00000081344 117.48 1220.63 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
70. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 117.48 1220.63 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
71. Ywhae ENSMUSG00000020849 116.73 1212.84 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
72. Rps5 ENSMUSG00000012848 112.96 1173.67 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
73. Rplp1 ENSMUSG00000007892 111.46 1158.08 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
74. Hnrnph1 ENSMUSG00000007850 110.70 1150.19 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
75. Rpl37 ENSMUSG00000041841 110.70 1150.19 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
76. Sox2 ENSMUSG00000074637 110.70 1150.19 SRY (sex determining region Y)-box 2 [Source:MGI Symbol;Acc:MGI:98364]
77. Ndufa12 ENSMUSG00000020022 109.95 1142.39 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
78. Stmn1 ENSMUSG00000028832 109.95 1142.39 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
79. Tmpo ENSMUSG00000019961 109.95 1142.39 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
80. Ywhab ENSMUSG00000018326 108.44 1126.71 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
81. Zic1 ENSMUSG00000032368 108.44 1126.71 zinc finger protein of the cerebellum 1 [Source:MGI Symbol;Acc:MGI:106683]
82. Eef1b2 ENSMUSG00000025967 107.69 1118.91 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
83. Trim28 ENSMUSG00000005566 107.69 1118.91 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
84. Ddx5 ENSMUSG00000020719 104.68 1087.64 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
85. Gm5805 ENSMUSG00000061848 104.68 1087.64 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
86. Msi1 ENSMUSG00000054256 104.68 1087.64 musashi RNA-binding protein 1 [Source:MGI Symbol;Acc:MGI:107376]
87. Fkbp1a ENSMUSG00000032966 103.93 1079.85 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
88. Plagl1 ENSMUSG00000019817 103.17 1071.95 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
89. Trp53i11 ENSMUSG00000068735 103.17 1071.95 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
90. Gm10800 ENSMUSG00000075014 101.67 1056.36 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
91. Hmgn1 ENSMUSG00000040681 100.16 1040.67 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
92. Sub1 ENSMUSG00000022205 100.16 1040.67 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
93. Myl6 ENSMUSG00000090841 99.41 1032.88 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
94. Rpl8 ENSMUSG00000003970 98.65 1024.99 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
95. Serbp1 ENSMUSG00000036371 98.65 1024.99 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
96. Cox8a ENSMUSG00000035885 97.90 1017.19 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
97. Hnrnpa0 ENSMUSG00000007836 96.40 1001.61 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
98. Rps9 ENSMUSG00000006333 96.40 1001.61 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
99. Pbx1 ENSMUSG00000052534 95.64 993.71 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
100. Sfpq ENSMUSG00000028820 94.89 985.92 splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) [Source:MGI Symbol;Acc:MGI:1918764]
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA