Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s83.

Sample reads: 96,252. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3412.41 35452.92 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Nd1 ENSMUSG00000064341 3004.05 31210.30 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
3. mt-Atp6 ENSMUSG00000064357 2527.42 26258.40 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Co2 ENSMUSG00000064354 2334.20 24250.96 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Nd4 ENSMUSG00000064363 2237.58 23247.13 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. Ptma ENSMUSG00000026238 1803.46 18736.88 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
7. mt-Co1 ENSMUSG00000064351 1333.27 13851.89 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd3 ENSMUSG00000064360 939.09 9756.59 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
9. Col1a1 ENSMUSG00000001506 901.73 9368.44 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
10. H19 ENSMUSG00000000031 870.81 9047.20 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
11. mt-Rnr2 ENSMUSG00000064339 810.27 8418.23 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
12. Actb ENSMUSG00000029580 798.68 8297.81 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
13. Igf2 ENSMUSG00000048583 753.59 7829.35 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
14. Hbb-y ENSMUSG00000052187 647.96 6731.92 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
15. mt-Co3 ENSMUSG00000064358 622.19 6464.19 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
16. mt-Nd2 ENSMUSG00000064345 613.18 6370.58 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
17. Mdk ENSMUSG00000027239 575.82 5982.43 midkine [Source:MGI Symbol;Acc:MGI:96949]
18. Eef1a1 ENSMUSG00000037742 504.97 5246.34 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
19. Col3a1 ENSMUSG00000026043 485.65 5045.62 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
20. Col1a2 ENSMUSG00000029661 417.37 4336.23 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
21. Gm13340 ENSMUSG00000083563 363.27 3774.16 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
22. mt-Nd5 ENSMUSG00000064367 333.64 3466.32 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
23. Hba-x ENSMUSG00000055609 306.59 3185.29 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
24. Plagl1 ENSMUSG00000019817 302.72 3145.08 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
25. Hba-a1 ENSMUSG00000069919 296.28 3078.17 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
26. Npm1 ENSMUSG00000057113 264.08 2743.64 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
27. Meg3 ENSMUSG00000021268 256.35 2663.32 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
28. Rpsa ENSMUSG00000032518 246.04 2556.21 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
29. Cfl1 ENSMUSG00000056201 243.47 2529.51 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
30. Tubb5 ENSMUSG00000001525 216.42 2248.48 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
31. Hsp90ab1 ENSMUSG00000023944 209.97 2181.46 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
32. Tuba1b ENSMUSG00000023004 208.69 2168.17 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
33. Ubb ENSMUSG00000019505 200.96 2087.86 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
34. Rpl4 ENSMUSG00000032399 197.09 2047.65 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
35. Tpt1 ENSMUSG00000060126 189.36 1967.34 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
36. Nedd4 ENSMUSG00000032216 176.48 1833.52 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
37. Myl6 ENSMUSG00000090841 168.75 1753.21 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
38. Hbb-bh1 ENSMUSG00000052217 158.45 1646.20 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
39. Tmsb4x ENSMUSG00000049775 157.16 1632.80 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
40. Eif5a ENSMUSG00000078812 155.87 1619.40 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
41. Grb10 ENSMUSG00000020176 152.01 1579.29 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
42. Hba-a2 ENSMUSG00000069917 152.01 1579.29 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
43. Hmga2 ENSMUSG00000056758 152.01 1579.29 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
44. Sparc ENSMUSG00000018593 150.72 1565.89 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
45. Dlk1 ENSMUSG00000040856, ENSMUSG00000098411 144.28 1498.98 delta like non-canonical Notch ligand 1 [Source:MGI Symbol;Acc:MGI:94900]
46. Sfrp1 ENSMUSG00000031548 144.28 1498.98 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
47. Afp ENSMUSG00000054932 142.99 1485.58 alpha fetoprotein [Source:MGI Symbol;Acc:MGI:87951]
48. Tpm1 ENSMUSG00000032366 141.70 1472.18 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
49. Eif4g2 ENSMUSG00000005610 140.41 1458.78 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
50. Rps26 ENSMUSG00000025362 140.41 1458.78 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
51. Peg3 ENSMUSG00000002265 137.84 1432.08 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
52. Pkm ENSMUSG00000032294 136.55 1418.67 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
53. Hnrnpc ENSMUSG00000060373 130.11 1351.77 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
54. Hsp90aa1 ENSMUSG00000021270 130.11 1351.77 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
55. Chchd2 ENSMUSG00000070493 127.53 1324.96 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
56. Cdkn1c ENSMUSG00000037664 126.24 1311.56 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
57. Acta2 ENSMUSG00000035783 124.95 1298.16 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
58. Atp5g3 ENSMUSG00000018770 121.09 1258.05 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
59. Ran ENSMUSG00000029430 121.09 1258.05 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
60. Set ENSMUSG00000054766 119.80 1244.65 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
61. Ywhab ENSMUSG00000018326 118.51 1231.25 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
62. Rpl23 ENSMUSG00000071415 117.23 1217.95 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
63. Lamp1 ENSMUSG00000031447 115.94 1204.55 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
64. Ybx1 ENSMUSG00000028639 115.94 1204.55 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
65. Eef1b2 ENSMUSG00000025967 114.65 1191.15 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
66. Pcbp1 ENSMUSG00000051695 112.07 1164.34 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
67. Rps20 ENSMUSG00000028234 112.07 1164.34 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
68. Igfbp4 ENSMUSG00000017493 110.78 1150.94 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
69. Gm10800 ENSMUSG00000075014 105.63 1097.43 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
70. Banf1 ENSMUSG00000024844 104.34 1084.03 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
71. Rpl18a ENSMUSG00000045128 104.34 1084.03 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
72. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 104.34 1084.03 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
73. Fkbp1a ENSMUSG00000032966 101.77 1057.33 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
74. Gm15459 ENSMUSG00000100801 99.19 1030.53 predicted gene 15459 [Source:MGI Symbol;Acc:MGI:3705702]
75. Ngfrap1 99.19 1030.53 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
76. mt-Rnr1 ENSMUSG00000064337 99.19 1030.53 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
77. Fn1 ENSMUSG00000026193 97.90 1017.12 fibronectin 1 [Source:MGI Symbol;Acc:MGI:95566]
78. Rplp1 ENSMUSG00000007892 97.90 1017.12 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
79. Morf4l1 ENSMUSG00000062270 96.61 1003.72 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
80. Rpl37 ENSMUSG00000041841 96.61 1003.72 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
81. Ago2 ENSMUSG00000036698 95.33 990.42 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
82. Rps3a1 ENSMUSG00000028081 95.33 990.42 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
83. Rpl8 ENSMUSG00000003970 94.04 977.02 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
84. Hmgn1 ENSMUSG00000040681 90.17 936.81 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
85. Rps4x ENSMUSG00000031320 88.88 923.41 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
86. Wbp5 88.88 923.41 WW domain binding protein 5
87. Rps9 ENSMUSG00000006333 87.60 910.11 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
88. Trim28 ENSMUSG00000005566 87.60 910.11 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
89. Pabpc1 ENSMUSG00000022283 86.31 896.71 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
90. Paics ENSMUSG00000029247 85.02 883.31 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
91. Eef2 ENSMUSG00000034994 83.73 869.91 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
92. Itm2a ENSMUSG00000031239 83.73 869.91 integral membrane protein 2A [Source:MGI Symbol;Acc:MGI:107706]
93. Kpnb1 ENSMUSG00000001440 82.44 856.50 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
94. Serbp1 ENSMUSG00000036371 82.44 856.50 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
95. U2af2 ENSMUSG00000030435 82.44 856.50 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
96. Vim ENSMUSG00000026728 82.44 856.50 vimentin [Source:MGI Symbol;Acc:MGI:98932]
97. Cdc42 ENSMUSG00000006699 81.16 843.20 cell division cycle 42 [Source:MGI Symbol;Acc:MGI:106211]
98. Ldha ENSMUSG00000063229 81.16 843.20 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
99. Anp32b ENSMUSG00000028333 78.58 816.40 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
100. Gm5805 ENSMUSG00000061848 78.58 816.40 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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