Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s80.

Sample reads: 96,249. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3884.30 40356.86 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Nd1 ENSMUSG00000064341 3186.52 33107.11 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
3. mt-Nd4 ENSMUSG00000064363 2674.82 27790.68 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
4. mt-Atp6 ENSMUSG00000064357 2418.97 25132.46 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
5. mt-Co2 ENSMUSG00000064354 2163.11 22474.15 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. Ptma ENSMUSG00000026238 1535.11 15949.39 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
7. mt-Rnr2 ENSMUSG00000064339 1442.08 14982.83 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
8. mt-Co1 ENSMUSG00000064351 1302.52 13532.84 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
9. mt-Nd3 ENSMUSG00000064360 953.63 9907.97 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. mt-Nd2 ENSMUSG00000064345 930.37 9666.30 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
11. H19 ENSMUSG00000000031 860.59 8941.30 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
12. Gm10800 ENSMUSG00000075014 814.08 8458.08 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
13. Actb ENSMUSG00000029580 744.30 7733.08 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. Igf2 ENSMUSG00000048583 674.52 7008.09 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
15. mt-Co3 ENSMUSG00000064358 674.52 7008.09 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
16. Eef1a1 ENSMUSG00000037742 651.26 6766.42 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
17. Col1a1 ENSMUSG00000001506 465.19 4833.20 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
18. Mdk ENSMUSG00000027239 465.19 4833.20 midkine [Source:MGI Symbol;Acc:MGI:96949]
19. Col3a1 ENSMUSG00000026043 372.15 3866.54 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
20. Col1a2 ENSMUSG00000029661 348.89 3624.88 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
21. Gm13340 ENSMUSG00000083563 325.63 3383.21 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
22. Ubb ENSMUSG00000019505 325.63 3383.21 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
23. mt-Nd5 ENSMUSG00000064367 325.63 3383.21 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
24. Fn1 ENSMUSG00000026193 302.37 3141.55 fibronectin 1 [Source:MGI Symbol;Acc:MGI:95566]
25. Tpt1 ENSMUSG00000060126 302.37 3141.55 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
26. Meg3 ENSMUSG00000021268 279.11 2899.88 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
27. Tuba1b ENSMUSG00000023004 279.11 2899.88 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
28. Afp ENSMUSG00000054932 255.85 2658.21 alpha fetoprotein [Source:MGI Symbol;Acc:MGI:87951]
29. Cfl1 ENSMUSG00000056201 255.85 2658.21 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
30. Hsp90ab1 ENSMUSG00000023944 255.85 2658.21 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
31. Sparc ENSMUSG00000018593 255.85 2658.21 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
32. Npm1 ENSMUSG00000057113 232.59 2416.55 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
33. Rpl18a ENSMUSG00000045128 232.59 2416.55 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
34. Tubb5 ENSMUSG00000001525 232.59 2416.55 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
35. Chchd2 ENSMUSG00000070493 209.33 2174.88 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
36. Grb10 ENSMUSG00000020176 209.33 2174.88 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
37. Pkm ENSMUSG00000032294 209.33 2174.88 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
38. Rpsa ENSMUSG00000032518 209.33 2174.88 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
39. mt-Rnr1 ENSMUSG00000064337 209.33 2174.88 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
40. Cdkn1c ENSMUSG00000037664 186.07 1933.22 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
41. Gm5805 ENSMUSG00000061848 186.07 1933.22 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
42. Hbb-y ENSMUSG00000052187 186.07 1933.22 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
43. Ngfrap1 186.07 1933.22 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
44. Rpl4 ENSMUSG00000032399 186.07 1933.22 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
45. Rps4x ENSMUSG00000031320 186.07 1933.22 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
46. Vim ENSMUSG00000026728 186.07 1933.22 vimentin [Source:MGI Symbol;Acc:MGI:98932]
47. Acta2 ENSMUSG00000035783 162.82 1691.66 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
48. Ago2 ENSMUSG00000036698 162.82 1691.66 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
49. Eif4g2 ENSMUSG00000005610 162.82 1691.66 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
50. Hmga2 ENSMUSG00000056758 162.82 1691.66 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
51. Hsp90aa1 ENSMUSG00000021270 162.82 1691.66 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
52. Nedd4 ENSMUSG00000032216 162.82 1691.66 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
53. Utp11l 162.82 1691.66 UTP11-like, U3 small nucleolar ribonucleoprotein, (yeast), transcript variant X2
54. Dlk1 ENSMUSG00000040856, ENSMUSG00000098411 139.56 1449.99 delta like non-canonical Notch ligand 1 [Source:MGI Symbol;Acc:MGI:94900]
55. Eef1b2 ENSMUSG00000025967 139.56 1449.99 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
56. Fkbp1a ENSMUSG00000032966 139.56 1449.99 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
57. Hba-a1 ENSMUSG00000069919 139.56 1449.99 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
58. Ldha ENSMUSG00000063229 139.56 1449.99 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
59. Morf4l2 ENSMUSG00000031422 139.56 1449.99 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
60. Pcbp1 ENSMUSG00000051695 139.56 1449.99 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
61. Rps26 ENSMUSG00000025362 139.56 1449.99 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
62. Srrm2 ENSMUSG00000039218 139.56 1449.99 serine/arginine repetitive matrix 2 [Source:MGI Symbol;Acc:MGI:1923206]
63. U2af2 ENSMUSG00000030435 139.56 1449.99 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
64. Ybx1 ENSMUSG00000028639 139.56 1449.99 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
65. Atxn7l3b ENSMUSG00000074748 116.30 1208.33 ataxin 7-like 3B [Source:MGI Symbol;Acc:MGI:1914971]
66. Gm9844 ENSMUSG00000091955 116.30 1208.33 predicted pseudogene 9844 [Source:MGI Symbol;Acc:MGI:3704288]
67. Ran ENSMUSG00000029430 116.30 1208.33 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
68. Rpl34 ENSMUSG00000062006 116.30 1208.33 ribosomal protein L34 [Source:MGI Symbol;Acc:MGI:1915686]
69. Rplp1 ENSMUSG00000007892 116.30 1208.33 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
70. Rps3a1 ENSMUSG00000028081 116.30 1208.33 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
71. Serbp1 ENSMUSG00000036371 116.30 1208.33 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
72. Sf3b1 ENSMUSG00000025982 116.30 1208.33 splicing factor 3b, subunit 1 [Source:MGI Symbol;Acc:MGI:1932339]
73. Srsf3 ENSMUSG00000071172 116.30 1208.33 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
74. Tmed2 ENSMUSG00000029390 116.30 1208.33 transmembrane p24 trafficking protein 2 [Source:MGI Symbol;Acc:MGI:1929269]
75. Tmem245 ENSMUSG00000055296 116.30 1208.33 transmembrane protein 245 [Source:MGI Symbol;Acc:MGI:2445107]
76. Tmsb4x ENSMUSG00000049775 116.30 1208.33 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
77. Top1 ENSMUSG00000070544 116.30 1208.33 topoisomerase (DNA) I [Source:MGI Symbol;Acc:MGI:98788]
78. Top2a ENSMUSG00000020914 116.30 1208.33 topoisomerase (DNA) II alpha [Source:MGI Symbol;Acc:MGI:98790]
79. Tpm4 ENSMUSG00000031799 116.30 1208.33 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
80. Ulk2 ENSMUSG00000004798 116.30 1208.33 unc-51 like kinase 2 [Source:MGI Symbol;Acc:MGI:1352758]
81. Ywhab ENSMUSG00000018326 116.30 1208.33 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
82. Arl6ip1 ENSMUSG00000030654 93.04 966.66 ADP-ribosylation factor-like 6 interacting protein 1 [Source:MGI Symbol;Acc:MGI:1858943]
83. Atp5g3 ENSMUSG00000018770 93.04 966.66 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
84. Bub3 ENSMUSG00000066979 93.04 966.66 BUB3 mitotic checkpoint protein [Source:MGI Symbol;Acc:MGI:1343463]
85. Cdc42 ENSMUSG00000006699 93.04 966.66 cell division cycle 42 [Source:MGI Symbol;Acc:MGI:106211]
86. Cdk1 ENSMUSG00000019942 93.04 966.66 cyclin-dependent kinase 1 [Source:MGI Symbol;Acc:MGI:88351]
87. Cks2 ENSMUSG00000062248 93.04 966.66 CDC28 protein kinase regulatory subunit 2 [Source:MGI Symbol;Acc:MGI:1913447]
88. Cramp1l ENSMUSG00000038002 93.04 966.66 cramped chromatin regulator homolog 1 [Source:MGI Symbol;Acc:MGI:1930190]
89. Ddx3x ENSMUSG00000000787 93.04 966.66 DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 3, X-linked [Source:MGI Symbol;Acc:MGI:103064]
90. Gm14303 ENSMUSG00000081344 93.04 966.66 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
91. Gm14586 ENSMUSG00000083621 93.04 966.66 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
92. Hnrnpf ENSMUSG00000042079 93.04 966.66 heterogeneous nuclear ribonucleoprotein F [Source:MGI Symbol;Acc:MGI:2138741]
93. Hp1bp3 ENSMUSG00000028759 93.04 966.66 heterochromatin protein 1, binding protein 3 [Source:MGI Symbol;Acc:MGI:109369]
94. Kif5b ENSMUSG00000006740 93.04 966.66 kinesin family member 5B [Source:MGI Symbol;Acc:MGI:1098268]
95. Lamp1 ENSMUSG00000031447 93.04 966.66 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
96. Mapre1 ENSMUSG00000027479 93.04 966.66 microtubule-associated protein, RP/EB family, member 1 [Source:MGI Symbol;Acc:MGI:891995]
97. Mrpl37 ENSMUSG00000028622 93.04 966.66 mitochondrial ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1926268]
98. Myl6 ENSMUSG00000090841 93.04 966.66 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
99. Oaz1 ENSMUSG00000035242 93.04 966.66 ornithine decarboxylase antizyme 1 [Source:MGI Symbol;Acc:MGI:109433]
100. Pbx1 ENSMUSG00000052534 93.04 966.66 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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