Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

Mouse data search


search
Exact
Search
Limit to:

{{libname.name}} 

Experiment Mouse_E11_5_slice_2, section s8.

Sample reads: 96,237. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. Ptma ENSMUSG00000026238 2691.71 27969.47 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
2. mt-Cytb ENSMUSG00000064370 2619.79 27222.15 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
3. mt-Atp6 ENSMUSG00000064357 1966.91 20438.10 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 1849.80 19221.21 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Nd4 ENSMUSG00000064363 1636.79 17007.83 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Co2 ENSMUSG00000064354 1448.67 15053.08 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Co1 ENSMUSG00000064351 1290.07 13405.07 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr2 ENSMUSG00000064339 1078.90 11210.81 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. Eef1a1 ENSMUSG00000037742 760.76 7905.03 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
10. Hbb-y ENSMUSG00000052187 671.31 6975.56 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
11. Actb ENSMUSG00000029580 592.01 6151.56 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. mt-Co3 ENSMUSG00000064358 519.16 5394.57 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. mt-Nd3 ENSMUSG00000064360 416.81 4331.06 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Hba-a1 ENSMUSG00000069919 367.01 3813.59 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
15. mt-Nd2 ENSMUSG00000064345 366.09 3804.03 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
16. Gm13340 ENSMUSG00000083563 362.40 3765.69 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
17. Rpsa ENSMUSG00000032518 341.19 3545.29 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
18. Hba-x ENSMUSG00000055609 301.54 3133.29 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
19. Mdk ENSMUSG00000027239 300.62 3123.73 midkine [Source:MGI Symbol;Acc:MGI:96949]
20. Tubb2b ENSMUSG00000045136 291.39 3027.82 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
21. Tuba1b ENSMUSG00000023004 279.41 2903.34 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
22. Cfl1 ENSMUSG00000056201 275.72 2865.00 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
23. Npm1 ENSMUSG00000057113 257.28 2673.39 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
24. Tubb5 ENSMUSG00000001525 257.28 2673.39 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
25. Tpt1 ENSMUSG00000060126 255.43 2654.16 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
26. Pkm ENSMUSG00000032294 251.74 2615.82 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
27. Tmsb4x ENSMUSG00000049775 244.37 2539.24 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
28. Nedd4 ENSMUSG00000032216 226.85 2357.19 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
29. Ybx1 ENSMUSG00000028639 225.92 2347.53 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
30. Ubb ENSMUSG00000019505 225.00 2337.97 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
31. Set ENSMUSG00000054766 214.86 2232.60 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
32. Eif4g2 ENSMUSG00000005610 211.17 2194.26 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
33. Ran ENSMUSG00000029430 207.48 2155.92 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
34. Tuba1a ENSMUSG00000072235 205.64 2136.80 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
35. Atp5g3 ENSMUSG00000018770 194.57 2021.77 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
36. Hsp90ab1 ENSMUSG00000023944 194.57 2021.77 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
37. Hbb-bh1 ENSMUSG00000052217 189.04 1964.31 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
38. Hsp90aa1 ENSMUSG00000021270 185.35 1925.97 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
39. Chchd2 ENSMUSG00000070493 181.66 1887.62 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
40. H19 ENSMUSG00000000031 181.66 1887.62 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
41. Rpl4 ENSMUSG00000032399 179.82 1868.50 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
42. Hnrnpc ENSMUSG00000060373 178.89 1858.84 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
43. mt-Nd5 ENSMUSG00000064367 177.05 1839.72 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
44. Cdkn1c ENSMUSG00000037664 176.13 1830.16 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
45. Hba-a2 ENSMUSG00000069917 170.59 1772.59 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
46. Eif5a ENSMUSG00000078812 169.67 1763.04 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
47. Ywhae ENSMUSG00000020849 166.91 1734.36 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
48. Vim ENSMUSG00000026728 160.45 1667.23 vimentin [Source:MGI Symbol;Acc:MGI:98932]
49. Crabp1 ENSMUSG00000032291 156.76 1628.89 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
50. Rrm2 ENSMUSG00000020649 148.46 1542.64 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
51. Rplp1 ENSMUSG00000007892 146.62 1523.52 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
52. Ywhab ENSMUSG00000018326 144.78 1504.40 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
53. Fkbp1a ENSMUSG00000032966 134.63 1398.94 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
54. Rpl23 ENSMUSG00000071415 133.71 1389.38 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
55. Rps20 ENSMUSG00000028234 131.87 1370.26 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
56. Map1b ENSMUSG00000052727 130.94 1360.59 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
57. Banf1 ENSMUSG00000024844 130.02 1351.03 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
58. Rps26 ENSMUSG00000025362 129.10 1341.47 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
59. Grb10 ENSMUSG00000020176 128.18 1331.91 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
60. Pcbp1 ENSMUSG00000051695 126.33 1312.69 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
61. Eef1b2 ENSMUSG00000025967 123.57 1284.01 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
62. Rpl18a ENSMUSG00000045128 120.80 1255.23 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
63. Zic1 ENSMUSG00000032368 120.80 1255.23 zinc finger protein of the cerebellum 1 [Source:MGI Symbol;Acc:MGI:106683]
64. Fscn1 ENSMUSG00000029581 119.88 1245.67 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
65. Basp1 ENSMUSG00000045763 118.96 1236.11 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
66. Msi1 ENSMUSG00000054256 118.96 1236.11 musashi RNA-binding protein 1 [Source:MGI Symbol;Acc:MGI:107376]
67. Gnai2 ENSMUSG00000032562 118.03 1226.45 guanine nucleotide binding protein (G protein), alpha inhibiting 2 [Source:MGI Symbol;Acc:MGI:95772]
68. Paics ENSMUSG00000029247 114.34 1188.10 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
69. Trp53i11 ENSMUSG00000068735 114.34 1188.10 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
70. H2afy ENSMUSG00000015937 113.42 1178.54 H2A histone family, member Y [Source:MGI Symbol;Acc:MGI:1349392]
71. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 113.42 1178.54 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
72. Gm14303 ENSMUSG00000081344 112.50 1168.98 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
73. Ldha ENSMUSG00000063229 111.58 1159.42 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
74. Gm5805 ENSMUSG00000061848 109.73 1140.20 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
75. Pabpc1 ENSMUSG00000022283 109.73 1140.20 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
76. Marcksl1 ENSMUSG00000047945 108.81 1130.64 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
77. U2af2 ENSMUSG00000030435 108.81 1130.64 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
78. Hnrnpa0 ENSMUSG00000007836 107.89 1121.08 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
79. Rps4x ENSMUSG00000031320 106.97 1111.52 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
80. Hmgn1 ENSMUSG00000040681 104.20 1082.74 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
81. Rpl32 ENSMUSG00000057841 104.20 1082.74 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
82. Hnrnpa2b1 ENSMUSG00000004980 103.28 1073.18 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
83. Ndufa12 ENSMUSG00000020022 100.51 1044.40 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
84. Nrep ENSMUSG00000042834 100.51 1044.40 neuronal regeneration related protein [Source:MGI Symbol;Acc:MGI:99444]
85. Rps5 ENSMUSG00000012848 99.59 1034.84 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
86. Malat1 ENSMUSG00000092341 97.75 1015.72 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
87. Marcks ENSMUSG00000069662 97.75 1015.72 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
88. Trim28 ENSMUSG00000005566 97.75 1015.72 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
89. Rps9 ENSMUSG00000006333 96.82 1006.05 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
90. Stmn1 ENSMUSG00000028832 95.90 996.49 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
91. Morf4l1 ENSMUSG00000062270 94.98 986.93 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
92. Rps3a1 ENSMUSG00000028081 94.98 986.93 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
93. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 94.06 977.37 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
94. Pbx1 ENSMUSG00000052534 94.06 977.37 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
95. Cdk4 ENSMUSG00000006728 93.14 967.81 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
96. Ddx5 ENSMUSG00000020719 93.14 967.81 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
97. Serbp1 ENSMUSG00000036371 93.14 967.81 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
98. Lamp1 ENSMUSG00000031447 92.21 958.15 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
99. Sox2 ENSMUSG00000074637 92.21 958.15 SRY (sex determining region Y)-box 2 [Source:MGI Symbol;Acc:MGI:98364]
100. Ckb ENSMUSG00000001270 90.37 939.03 creatine kinase, brain [Source:MGI Symbol;Acc:MGI:88407]
First Previous 1 2 3 Next Last
Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
Robin Lab - 2019 © Hubrecht Institute | Berezikov Lab - 2019 © ERIBA