Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s7.

Sample reads: 96,238. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 2457.49 25535.45 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2406.68 25007.49 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Nd1 ENSMUSG00000064341 2218.69 23054.11 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
4. mt-Co2 ENSMUSG00000064354 1986.66 20643.12 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
5. mt-Atp6 ENSMUSG00000064357 1964.64 20414.31 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
6. mt-Nd4 ENSMUSG00000064363 1815.60 18865.65 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
7. mt-Co1 ENSMUSG00000064351 1255.00 13040.54 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. Eef1a1 ENSMUSG00000037742 704.56 7320.99 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
9. mt-Nd3 ENSMUSG00000064360 667.30 6933.82 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. Hbb-y ENSMUSG00000052187 657.14 6828.25 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
11. mt-Rnr2 ENSMUSG00000064339 645.28 6705.02 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
12. mt-Co3 ENSMUSG00000064358 628.35 6529.10 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
13. Actb ENSMUSG00000029580 525.03 5455.52 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
14. mt-Nd2 ENSMUSG00000064345 445.43 4628.40 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
15. Rpsa ENSMUSG00000032518 374.30 3889.30 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
16. Gm13340 ENSMUSG00000083563 333.65 3466.91 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
17. Tmsb4x ENSMUSG00000049775 325.18 3378.90 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
18. Hba-a1 ENSMUSG00000069919 298.08 3097.31 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
19. Tubb2b ENSMUSG00000045136 293.00 3044.52 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
20. Cfl1 ENSMUSG00000056201 270.98 2815.72 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
21. Tuba1b ENSMUSG00000023004 260.82 2710.15 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
22. Mdk ENSMUSG00000027239 257.44 2675.02 midkine [Source:MGI Symbol;Acc:MGI:96949]
23. Tubb5 ENSMUSG00000001525 255.74 2657.36 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
24. Tpt1 ENSMUSG00000060126 250.66 2604.57 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
25. Pkm ENSMUSG00000032294 248.97 2587.01 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
26. Eif4g2 ENSMUSG00000005610 242.19 2516.56 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
27. Hba-x ENSMUSG00000055609 242.19 2516.56 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
28. Npm1 ENSMUSG00000057113 240.50 2499.00 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
29. Ubb ENSMUSG00000019505 233.72 2428.55 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
30. H19 ENSMUSG00000000031 221.87 2305.42 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
31. Hnrnpc ENSMUSG00000060373 216.79 2252.64 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
32. Rpl4 ENSMUSG00000032399 215.09 2234.97 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
33. Set ENSMUSG00000054766 211.71 2199.85 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
34. Nedd4 ENSMUSG00000032216 203.24 2111.84 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
35. Hsp90ab1 ENSMUSG00000023944 201.54 2094.17 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
36. Tuba1a ENSMUSG00000072235 193.08 2006.27 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
37. mt-Nd5 ENSMUSG00000064367 193.08 2006.27 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
38. Hsp90aa1 ENSMUSG00000021270 189.69 1971.04 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
39. Hbb-bh1 ENSMUSG00000052217 182.91 1900.59 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
40. Eif5a ENSMUSG00000078812 181.22 1883.03 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
41. Rps26 ENSMUSG00000025362 174.45 1812.69 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
42. Ybx1 ENSMUSG00000028639 171.06 1777.46 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
43. Ran ENSMUSG00000029430 157.51 1636.67 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
44. Rpl23 ENSMUSG00000071415 155.82 1619.10 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
45. Gm10800 ENSMUSG00000075014 154.12 1601.44 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
46. Rps20 ENSMUSG00000028234 154.12 1601.44 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
47. Vim ENSMUSG00000026728 152.43 1583.88 vimentin [Source:MGI Symbol;Acc:MGI:98932]
48. Atp5g3 ENSMUSG00000018770 150.74 1566.32 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
49. Chchd2 ENSMUSG00000070493 138.88 1443.08 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
50. Gm14303 ENSMUSG00000081344 138.88 1443.08 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
51. Ndufa12 ENSMUSG00000020022 138.88 1443.08 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
52. Rrm2 ENSMUSG00000020649 138.88 1443.08 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
53. Hba-a2 ENSMUSG00000069917 137.19 1425.52 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
54. Rpl32 ENSMUSG00000057841 132.10 1372.63 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
55. Rps4x ENSMUSG00000031320 132.10 1372.63 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
56. Rpl18a ENSMUSG00000045128 128.72 1337.51 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
57. Rplp1 ENSMUSG00000007892 128.72 1337.51 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
58. Ywhae ENSMUSG00000020849 128.72 1337.51 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
59. Map1b ENSMUSG00000052727 127.02 1319.85 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
60. Basp1 ENSMUSG00000045763 125.33 1302.29 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
61. Cdkn1c ENSMUSG00000037664 123.64 1284.73 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
62. Paics ENSMUSG00000029247 123.64 1284.73 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
63. Gm5805 ENSMUSG00000061848 121.94 1267.06 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
64. Ywhab ENSMUSG00000018326 121.94 1267.06 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
65. Hmgn1 ENSMUSG00000040681 120.25 1249.50 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
66. Hnrnpa2b1 ENSMUSG00000004980 120.25 1249.50 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
67. Banf1 ENSMUSG00000024844 118.56 1231.94 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
68. Fkbp1a ENSMUSG00000032966 115.17 1196.72 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
69. Eef1b2 ENSMUSG00000025967 113.47 1179.05 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
70. Myl6 ENSMUSG00000090841 113.47 1179.05 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
71. Rps5 ENSMUSG00000012848 113.47 1179.05 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
72. Ldha ENSMUSG00000063229 111.78 1161.49 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
73. Pabpc1 ENSMUSG00000022283 111.78 1161.49 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
74. Crabp1 ENSMUSG00000032291 110.09 1143.93 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
75. Anp32b ENSMUSG00000028333 108.39 1126.27 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
76. Hnrnpa0 ENSMUSG00000007836 108.39 1126.27 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
77. Marcks ENSMUSG00000069662 106.70 1108.71 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
78. Rps15 ENSMUSG00000063457 106.70 1108.71 ribosomal protein S15 [Source:MGI Symbol;Acc:MGI:98117]
79. Srsf3 ENSMUSG00000071172 106.70 1108.71 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
80. Hnrnpk ENSMUSG00000021546 105.01 1091.14 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
81. Grb10 ENSMUSG00000020176 101.62 1055.92 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
82. Pcbp1 ENSMUSG00000051695 101.62 1055.92 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
83. Ddx5 ENSMUSG00000020719 99.93 1038.36 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
84. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 99.93 1038.36 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
85. Stmn1 ENSMUSG00000028832 99.93 1038.36 stathmin 1 [Source:MGI Symbol;Acc:MGI:96739]
86. Tmpo ENSMUSG00000019961 99.93 1038.36 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
87. Rps3a1 ENSMUSG00000028081 98.23 1020.69 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
88. Rps9 ENSMUSG00000006333 98.23 1020.69 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
89. Sub1 ENSMUSG00000022205 98.23 1020.69 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
90. Cdk4 ENSMUSG00000006728 96.54 1003.13 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
91. Eef2 ENSMUSG00000034994 96.54 1003.13 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
92. Hnrnpa1 ENSMUSG00000046434 96.54 1003.13 heterogeneous nuclear ribonucleoprotein A1 [Source:MGI Symbol;Acc:MGI:104820]
93. Serbp1 ENSMUSG00000036371 96.54 1003.13 serpine1 mRNA binding protein 1 [Source:MGI Symbol;Acc:MGI:1914120]
94. Scd2 ENSMUSG00000025203 94.84 985.47 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
95. Cd24a ENSMUSG00000047139 93.15 967.91 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
96. Lamp1 ENSMUSG00000031447 93.15 967.91 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
97. Marcksl1 ENSMUSG00000047945 93.15 967.91 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
98. Morf4l1 ENSMUSG00000062270 93.15 967.91 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
99. Pbx1 ENSMUSG00000052534 93.15 967.91 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
100. Sox2 ENSMUSG00000074637 93.15 967.91 SRY (sex determining region Y)-box 2 [Source:MGI Symbol;Acc:MGI:98364]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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