Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s62.

Sample reads: 96,258. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 4069.59 42278.14 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Nd1 ENSMUSG00000064341 2796.83 29055.69 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
3. mt-Co2 ENSMUSG00000064354 2684.80 27891.84 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
4. mt-Nd4 ENSMUSG00000064363 2658.55 27619.13 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Atp6 ENSMUSG00000064357 2573.77 26738.37 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
6. Ptma ENSMUSG00000026238 2309.33 23991.16 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
7. mt-Co1 ENSMUSG00000064351 1533.16 15927.69 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr2 ENSMUSG00000064339 920.50 9562.89 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. mt-Nd3 ENSMUSG00000064360 902.33 9374.12 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
10. mt-Co3 ENSMUSG00000064358 788.28 8189.28 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
11. mt-Nd2 ENSMUSG00000064345 691.39 7182.71 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
12. H19 ENSMUSG00000000031 687.35 7140.74 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
13. Mdk ENSMUSG00000027239 681.29 7077.78 midkine [Source:MGI Symbol;Acc:MGI:96949]
14. Actb ENSMUSG00000029580 657.07 6826.17 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
15. Eef1a1 ENSMUSG00000037742 555.13 5767.13 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
16. Igf2 ENSMUSG00000048583 486.49 5054.05 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. Gm13340 ENSMUSG00000083563 371.43 3858.71 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
18. Hmga2 ENSMUSG00000056758 292.70 3040.80 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
19. mt-Nd5 ENSMUSG00000064367 258.39 2684.36 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
20. Npm1 ENSMUSG00000057113 231.13 2401.16 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
21. Rpsa ENSMUSG00000032518 218.01 2264.86 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
22. Tubb5 ENSMUSG00000001525 214.99 2233.49 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
23. Tuba1b ENSMUSG00000023004 212.97 2212.50 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. Ubb ENSMUSG00000019505 206.91 2149.55 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
25. Cfl1 ENSMUSG00000056201 205.90 2139.05 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
26. Nedd4 ENSMUSG00000032216 202.87 2107.57 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Pkm ENSMUSG00000032294 195.81 2034.23 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
28. Tpt1 ENSMUSG00000060126 191.77 1992.26 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
29. Hsp90ab1 ENSMUSG00000023944 190.76 1981.77 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
30. Pbx1 ENSMUSG00000052534 184.71 1918.91 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
31. Chchd2 ENSMUSG00000070493 176.63 1834.97 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
32. Grb10 ENSMUSG00000020176 176.63 1834.97 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
33. Peg3 ENSMUSG00000002265 168.56 1751.14 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
34. Col3a1 ENSMUSG00000026043 161.49 1677.69 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
35. Eif4g2 ENSMUSG00000005610 161.49 1677.69 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
36. Atp5g3 ENSMUSG00000018770 150.39 1562.37 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
37. Myl6 ENSMUSG00000090841 144.33 1499.41 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
38. Sfrp1 ENSMUSG00000031548 144.33 1499.41 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
39. Ybx1 ENSMUSG00000028639 137.27 1426.07 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
40. Wbp5 136.26 1415.58 WW domain binding protein 5
41. Hnrnpc ENSMUSG00000060373 131.21 1363.11 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
42. Col1a1 ENSMUSG00000001506 130.20 1352.62 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
43. Rpl23 ENSMUSG00000071415 130.20 1352.62 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
44. Ywhab ENSMUSG00000018326 128.18 1331.64 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
45. Banf1 ENSMUSG00000024844 127.17 1321.14 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
46. Set ENSMUSG00000054766 126.17 1310.75 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
47. Ngfrap1 125.16 1300.26 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
48. Rps26 ENSMUSG00000025362 125.16 1300.26 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
49. Col1a2 ENSMUSG00000029661 124.15 1289.77 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
50. Rps4x ENSMUSG00000031320 124.15 1289.77 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
51. Rpl4 ENSMUSG00000032399 119.10 1237.31 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
52. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 119.10 1237.31 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
53. Rps20 ENSMUSG00000028234 118.09 1226.81 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
54. Eif5a ENSMUSG00000078812 117.08 1216.32 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
55. Acta2 ENSMUSG00000035783 115.06 1195.33 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
56. Eef1b2 ENSMUSG00000025967 115.06 1195.33 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
57. Plagl1 ENSMUSG00000019817 113.04 1174.35 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
58. Rpl18a ENSMUSG00000045128 112.03 1163.86 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
59. Gm5805 ENSMUSG00000061848 111.03 1153.47 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
60. Hsp90aa1 ENSMUSG00000021270 109.01 1132.48 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
61. U2af2 ENSMUSG00000030435 106.99 1111.50 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
62. Trim28 ENSMUSG00000005566 105.98 1101.00 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
63. Hmgn1 ENSMUSG00000040681 104.97 1090.51 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
64. Ran ENSMUSG00000029430 102.95 1069.53 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
65. Fkbp1a ENSMUSG00000032966 99.92 1038.05 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
66. mt-Rnr1 ENSMUSG00000064337 98.91 1027.56 mitochondrially encoded 12S rRNA [Source:MGI Symbol;Acc:MGI:102493]
67. Tsc22d1 ENSMUSG00000022010 97.90 1017.06 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
68. Cdkn1c ENSMUSG00000037664 96.89 1006.57 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
69. Sparc ENSMUSG00000018593 96.89 1006.57 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
70. Paics ENSMUSG00000029247 93.87 975.20 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
71. Cdk4 ENSMUSG00000006728 92.86 964.70 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
72. Igfbp5 ENSMUSG00000026185 92.86 964.70 insulin-like growth factor binding protein 5 [Source:MGI Symbol;Acc:MGI:96440]
73. Cox8a ENSMUSG00000035885 90.84 943.72 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
74. Meg3 ENSMUSG00000021268 90.84 943.72 maternally expressed 3 [Source:MGI Symbol;Acc:MGI:1202886]
75. Anp32b ENSMUSG00000028333 89.83 933.23 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
76. Hnrnpa2b1 ENSMUSG00000004980 88.82 922.73 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
77. Marcksl1 ENSMUSG00000047945 88.82 922.73 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
78. Rps3a1 ENSMUSG00000028081 88.82 922.73 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
79. Gm14303 ENSMUSG00000081344 87.81 912.24 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
80. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 87.81 912.24 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
81. Morf4l2 ENSMUSG00000031422 87.81 912.24 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
82. Rpl32 ENSMUSG00000057841 87.81 912.24 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
83. Pabpc1 ENSMUSG00000022283 85.79 891.25 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
84. Sub1 ENSMUSG00000022205 85.79 891.25 SUB1 homolog (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:104811]
85. Rps9 ENSMUSG00000006333 83.77 870.27 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
86. Gpc3 ENSMUSG00000055653 82.76 859.78 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
87. Ywhae ENSMUSG00000020849 82.76 859.78 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
88. Tecr ENSMUSG00000031708 81.76 849.39 trans-2,3-enoyl-CoA reductase [Source:MGI Symbol;Acc:MGI:1915408]
89. Rrm2 ENSMUSG00000020649 80.75 838.90 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
90. Hnrnpk ENSMUSG00000021546 79.74 828.40 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
91. Igfbp4 ENSMUSG00000017493 78.73 817.91 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
92. Pcbp1 ENSMUSG00000051695 78.73 817.91 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
93. Rpl8 ENSMUSG00000003970 77.72 807.42 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
94. Ago2 ENSMUSG00000036698 76.71 796.92 argonaute RISC catalytic subunit 2 [Source:MGI Symbol;Acc:MGI:2446632]
95. Rplp1 ENSMUSG00000007892 76.71 796.92 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
96. Vim ENSMUSG00000026728 76.71 796.92 vimentin [Source:MGI Symbol;Acc:MGI:98932]
97. H3f3b ENSMUSG00000016559 75.70 786.43 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
98. Morf4l1 ENSMUSG00000062270 75.70 786.43 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
99. Tpm1 ENSMUSG00000032366 75.70 786.43 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
100. Ywhaq ENSMUSG00000076432 75.70 786.43 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein theta [Source:MGI Symbol;Acc:MGI:891963]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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