Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s61.

Sample reads: 96,247. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 5489.74 57038.16 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Atp6 ENSMUSG00000064357 3319.55 34489.98 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Nd1 ENSMUSG00000064341 3301.45 34301.92 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
4. mt-Nd4 ENSMUSG00000064363 3192.85 33173.57 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Co2 ENSMUSG00000064354 3176.56 33004.32 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. Ptma ENSMUSG00000026238 2139.42 22228.48 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
7. mt-Co1 ENSMUSG00000064351 1766.56 18354.48 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Nd3 ENSMUSG00000064360 1324.92 13765.86 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
9. mt-Co3 ENSMUSG00000064358 1145.73 11904.08 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
10. mt-Nd2 ENSMUSG00000064345 894.14 9290.08 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
11. Actb ENSMUSG00000029580 763.82 7936.06 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
12. Mdk ENSMUSG00000027239 684.18 7108.60 midkine [Source:MGI Symbol;Acc:MGI:96949]
13. H19 ENSMUSG00000000031 671.51 6976.96 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
14. Eef1a1 ENSMUSG00000037742 541.19 5622.94 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
15. Gm13340 ENSMUSG00000083563 492.32 5115.18 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
16. Igf2 ENSMUSG00000048583 476.03 4945.93 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
17. mt-Nd5 ENSMUSG00000064367 343.90 3573.11 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
18. Npm1 ENSMUSG00000057113 296.84 3084.15 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
19. mt-Rnr2 ENSMUSG00000064339 273.31 2839.68 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
20. Pkm ENSMUSG00000032294 258.83 2689.23 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
21. Rpsa ENSMUSG00000032518 258.83 2689.23 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
22. Cfl1 ENSMUSG00000056201 231.68 2407.14 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
23. Tuba1b ENSMUSG00000023004 229.87 2388.34 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. Ubb ENSMUSG00000019505 228.06 2369.53 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
25. Tpt1 ENSMUSG00000060126 224.44 2331.92 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
26. Nedd4 ENSMUSG00000032216 177.38 1842.97 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
27. Tubb5 ENSMUSG00000001525 173.76 1805.36 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
28. Hsp90ab1 ENSMUSG00000023944 170.14 1767.75 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
29. Eif4g2 ENSMUSG00000005610 162.90 1692.52 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
30. Rpl4 ENSMUSG00000032399 162.90 1692.52 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
31. Col3a1 ENSMUSG00000026043 152.04 1579.69 collagen, type III, alpha 1 [Source:MGI Symbol;Acc:MGI:88453]
32. Myl6 ENSMUSG00000090841 146.61 1523.27 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
33. Rpl23 ENSMUSG00000071415 146.61 1523.27 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
34. Atp5g3 ENSMUSG00000018770 142.99 1485.66 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
35. Grb10 ENSMUSG00000020176 142.99 1485.66 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
36. Hmga2 ENSMUSG00000056758 142.99 1485.66 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
37. Rpl18a ENSMUSG00000045128 142.99 1485.66 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
38. Sfrp1 ENSMUSG00000031548 141.18 1466.85 secreted frizzled-related protein 1 [Source:MGI Symbol;Acc:MGI:892014]
39. Gm5805 ENSMUSG00000061848 139.37 1448.05 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
40. Rps26 ENSMUSG00000025362 139.37 1448.05 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
41. Hbb-y ENSMUSG00000052187 137.56 1429.24 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
42. Banf1 ENSMUSG00000024844 135.75 1410.44 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
43. Chchd2 ENSMUSG00000070493 135.75 1410.44 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
44. Ngfrap1 133.94 1391.63 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
45. Gm14303 ENSMUSG00000081344 128.51 1335.21 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
46. Rps4x ENSMUSG00000031320 126.70 1316.41 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
47. Rps5 ENSMUSG00000012848 126.70 1316.41 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
48. Fkbp1a ENSMUSG00000032966 124.89 1297.60 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
49. Ran ENSMUSG00000029430 124.89 1297.60 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
50. Peg3 ENSMUSG00000002265 123.08 1278.80 paternally expressed 3 [Source:MGI Symbol;Acc:MGI:104748]
51. Rplp1 ENSMUSG00000007892 123.08 1278.80 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
52. Rps20 ENSMUSG00000028234 121.27 1259.99 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
53. Acta2 ENSMUSG00000035783 117.65 1222.38 actin, alpha 2, smooth muscle, aorta [Source:MGI Symbol;Acc:MGI:87909]
54. Morf4l1 ENSMUSG00000062270 117.65 1222.38 mortality factor 4 like 1 [Source:MGI Symbol;Acc:MGI:1096551]
55. Eif5a ENSMUSG00000078812 114.03 1184.77 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
56. Tsc22d1 ENSMUSG00000022010 112.22 1165.96 TSC22 domain family, member 1 [Source:MGI Symbol;Acc:MGI:109127]
57. Hsp90aa1 ENSMUSG00000021270 110.41 1147.16 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
58. Ywhab ENSMUSG00000018326 110.41 1147.16 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
59. Hnrnpc ENSMUSG00000060373 108.60 1128.35 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
60. Cdkn1c ENSMUSG00000037664 106.79 1109.54 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
61. Eef1b2 ENSMUSG00000025967 106.79 1109.54 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
62. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 106.79 1109.54 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
63. U2af2 ENSMUSG00000030435 106.79 1109.54 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
64. Col1a1 ENSMUSG00000001506 104.98 1090.74 collagen, type I, alpha 1 [Source:MGI Symbol;Acc:MGI:88467]
65. Paics ENSMUSG00000029247 103.17 1071.93 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
66. Trim28 ENSMUSG00000005566 101.36 1053.13 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
67. Eef2 ENSMUSG00000034994 99.55 1034.32 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
68. Hnrnpk ENSMUSG00000021546 97.74 1015.51 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
69. Plagl1 ENSMUSG00000019817 97.74 1015.51 pleiomorphic adenoma gene-like 1 [Source:MGI Symbol;Acc:MGI:1100874]
70. Ybx1 ENSMUSG00000028639 97.74 1015.51 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
71. Lamp1 ENSMUSG00000031447 95.93 996.71 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
72. Hmgn1 ENSMUSG00000040681 94.12 977.90 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
73. Tpm4 ENSMUSG00000031799 94.12 977.90 tropomyosin 4 [Source:MGI Symbol;Acc:MGI:2449202]
74. Gpc3 ENSMUSG00000055653 92.31 959.10 glypican 3 [Source:MGI Symbol;Acc:MGI:104903]
75. Rps3a1 ENSMUSG00000028081 92.31 959.10 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
76. Set ENSMUSG00000054766 92.31 959.10 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
77. Ywhae ENSMUSG00000020849 92.31 959.10 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
78. Col1a2 ENSMUSG00000029661 90.50 940.29 collagen, type I, alpha 2 [Source:MGI Symbol;Acc:MGI:88468]
79. Rpl32 ENSMUSG00000057841 90.50 940.29 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
80. H3f3b ENSMUSG00000016559 88.69 921.49 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
81. Marcks ENSMUSG00000069662 88.69 921.49 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
82. Rpl37 ENSMUSG00000041841 88.69 921.49 ribosomal protein L37 [Source:MGI Symbol;Acc:MGI:1914531]
83. Rpl26 ENSMUSG00000060938 86.88 902.68 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
84. Crabp1 ENSMUSG00000032291 83.26 865.07 cellular retinoic acid binding protein I [Source:MGI Symbol;Acc:MGI:88490]
85. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 83.26 865.07 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
86. Rps9 ENSMUSG00000006333 83.26 865.07 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
87. Sparc ENSMUSG00000018593 83.26 865.07 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
88. Gm5963 ENSMUSG00000052192 81.45 846.26 predicted pseudogene 5963 [Source:MGI Symbol;Acc:MGI:3648418]
89. Pbx1 ENSMUSG00000052534 81.45 846.26 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
90. Scd2 ENSMUSG00000025203 79.64 827.46 stearoyl-Coenzyme A desaturase 2 [Source:MGI Symbol;Acc:MGI:98240]
91. Tmsb4x ENSMUSG00000049775 79.64 827.46 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
92. Tpm1 ENSMUSG00000032366 77.83 808.65 tropomyosin 1, alpha [Source:MGI Symbol;Acc:MGI:98809]
93. Ddx5 ENSMUSG00000020719 76.02 789.84 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
94. Lrrc17 ENSMUSG00000039883 76.02 789.84 leucine rich repeat containing 17 [Source:MGI Symbol;Acc:MGI:1921761]
95. Rpl8 ENSMUSG00000003970 76.02 789.84 ribosomal protein L8 [Source:MGI Symbol;Acc:MGI:1350927]
96. Vim ENSMUSG00000026728 76.02 789.84 vimentin [Source:MGI Symbol;Acc:MGI:98932]
97. Anp32b ENSMUSG00000028333 74.21 771.04 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
98. Morf4l2 ENSMUSG00000031422 74.21 771.04 mortality factor 4 like 2 [Source:MGI Symbol;Acc:MGI:1927167]
99. Rpl39-ps ENSMUSG00000036305 74.21 771.04 ribosomal protein L39, pseudogene [Source:MGI Symbol;Acc:MGI:3705781]
100. Gm14586 ENSMUSG00000083621 72.40 752.23 predicted gene 14586 [Source:MGI Symbol;Acc:MGI:3705507]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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