Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s6.

Sample reads: 96,242. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 2713.46 28194.24 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. Ptma ENSMUSG00000026238 2446.88 25424.33 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
3. mt-Atp6 ENSMUSG00000064357 1938.19 20138.78 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
4. mt-Nd1 ENSMUSG00000064341 1840.26 19121.24 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
5. mt-Nd4 ENSMUSG00000064363 1833.46 19050.59 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
6. mt-Co2 ENSMUSG00000064354 1577.75 16393.63 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
7. mt-Co1 ENSMUSG00000064351 1275.80 13256.21 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr2 ENSMUSG00000064339 727.67 7560.86 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. mt-Co3 ENSMUSG00000064358 647.42 6727.02 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
10. Actb ENSMUSG00000029580 641.98 6670.50 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
11. Eef1a1 ENSMUSG00000037742 613.42 6373.75 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
12. Hbb-y ENSMUSG00000052187 478.77 4974.66 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
13. mt-Nd3 ENSMUSG00000064360 459.72 4776.73 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
14. Mdk ENSMUSG00000027239 359.07 3730.92 midkine [Source:MGI Symbol;Acc:MGI:96949]
15. Gm13340 ENSMUSG00000083563 334.59 3476.56 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
16. Tubb5 ENSMUSG00000001525 330.51 3434.17 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
17. mt-Nd2 ENSMUSG00000064345 319.63 3321.12 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
18. Tpt1 ENSMUSG00000060126 292.43 3038.50 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
19. Rpsa ENSMUSG00000032518 291.07 3024.37 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
20. Tubb2b ENSMUSG00000045136 276.11 2868.92 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
21. Gm10800 ENSMUSG00000075014 269.31 2798.27 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
22. Tuba1a ENSMUSG00000072235 269.31 2798.27 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
23. Tuba1b ENSMUSG00000023004 258.42 2685.12 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
24. Npm1 ENSMUSG00000057113 251.62 2614.46 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
25. Tmsb4x ENSMUSG00000049775 248.90 2586.20 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
26. Ubb ENSMUSG00000019505 240.74 2501.41 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
27. Hba-a1 ENSMUSG00000069919 236.66 2459.02 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
28. Ybx1 ENSMUSG00000028639 231.22 2402.49 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
29. Hnrnpc ENSMUSG00000060373 225.78 2345.97 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
30. Eif4g2 ENSMUSG00000005610 221.70 2303.58 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
31. Rpl4 ENSMUSG00000032399 212.18 2204.66 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
32. Cfl1 ENSMUSG00000056201 209.46 2176.40 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
33. Chchd2 ENSMUSG00000070493 206.74 2148.13 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
34. Pkm ENSMUSG00000032294 198.58 2063.35 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
35. Nedd4 ENSMUSG00000032216 193.14 2006.82 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
36. Hba-x ENSMUSG00000055609 176.82 1837.25 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
37. Atp5g3 ENSMUSG00000018770 168.66 1752.46 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
38. H19 ENSMUSG00000000031 167.30 1738.33 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
39. Hsp90ab1 ENSMUSG00000023944 167.30 1738.33 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
40. Vim ENSMUSG00000026728 167.30 1738.33 vimentin [Source:MGI Symbol;Acc:MGI:98932]
41. Set ENSMUSG00000054766 160.50 1667.68 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
42. Eif5a ENSMUSG00000078812 153.69 1596.92 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
43. Grb10 ENSMUSG00000020176 152.33 1582.79 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
44. mt-Nd5 ENSMUSG00000064367 149.61 1554.52 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
45. Gm14303 ENSMUSG00000081344 146.89 1526.26 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
46. Ran ENSMUSG00000029430 145.53 1512.13 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
47. Hsp90aa1 ENSMUSG00000021270 144.17 1498.00 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
48. Sf1 ENSMUSG00000024949, ENSMUSG00000106722 136.01 1413.21 splicing factor 1 [Source:MGI Symbol;Acc:MGI:1095403]
49. Hnrnpa0 ENSMUSG00000007836 133.29 1384.95 heterogeneous nuclear ribonucleoprotein A0 [Source:MGI Symbol;Acc:MGI:1924384]
50. Hbb-bh1 ENSMUSG00000052217 130.57 1356.69 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
51. Rps26 ENSMUSG00000025362 129.21 1342.56 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
52. Basp1 ENSMUSG00000045763 126.49 1314.30 brain abundant, membrane attached signal protein 1 [Source:MGI Symbol;Acc:MGI:1917600]
53. Marcks ENSMUSG00000069662 126.49 1314.30 myristoylated alanine rich protein kinase C substrate [Source:MGI Symbol;Acc:MGI:96907]
54. Ywhae ENSMUSG00000020849 125.13 1300.16 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, epsilon polypeptide [Source:MGI Symbol;Acc:MGI:894689]
55. Banf1 ENSMUSG00000024844 123.77 1286.03 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
56. Fkbp1a ENSMUSG00000032966 123.77 1286.03 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
57. Rps20 ENSMUSG00000028234 123.77 1286.03 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
58. Rpl23 ENSMUSG00000071415 122.41 1271.90 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
59. Map1b ENSMUSG00000052727 121.05 1257.77 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
60. Rplp1 ENSMUSG00000007892 121.05 1257.77 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
61. Pabpc1 ENSMUSG00000022283 118.33 1229.51 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
62. Ddx5 ENSMUSG00000020719 116.97 1215.38 DEAD (Asp-Glu-Ala-Asp) box polypeptide 5 [Source:MGI Symbol;Acc:MGI:105037]
63. Hmgn1 ENSMUSG00000040681 114.25 1187.12 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
64. Hoxa5 ENSMUSG00000038253 114.25 1187.12 homeobox A5 [Source:MGI Symbol;Acc:MGI:96177]
65. Rps4x ENSMUSG00000031320 114.25 1187.12 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
66. Eef1b2 ENSMUSG00000025967 112.89 1172.98 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
67. Rpl18a ENSMUSG00000045128 112.89 1172.98 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
68. Ywhab ENSMUSG00000018326 111.53 1158.85 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
69. Cdkn1c ENSMUSG00000037664 110.17 1144.72 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
70. Lamp1 ENSMUSG00000031447 110.17 1144.72 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
71. Zic1 ENSMUSG00000032368 108.81 1130.59 zinc finger protein of the cerebellum 1 [Source:MGI Symbol;Acc:MGI:106683]
72. Msi1 ENSMUSG00000054256 107.45 1116.46 musashi RNA-binding protein 1 [Source:MGI Symbol;Acc:MGI:107376]
73. Rrm2 ENSMUSG00000020649 107.45 1116.46 ribonucleotide reductase M2 [Source:MGI Symbol;Acc:MGI:98181]
74. Hnrnph1 ENSMUSG00000007850 106.09 1102.33 heterogeneous nuclear ribonucleoprotein H1 [Source:MGI Symbol;Acc:MGI:1891925]
75. Rps5 ENSMUSG00000012848 106.09 1102.33 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
76. Pcbp1 ENSMUSG00000051695 104.73 1088.20 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
77. Paics ENSMUSG00000029247 103.37 1074.07 phosphoribosylaminoimidazole carboxylase, phosphoribosylaminoribosylaminoimidazole, succinocarboxamide synthetase [Source:MGI Symbol;Acc:MGI:1914304]
78. Hnrnpa2b1 ENSMUSG00000004980 102.01 1059.94 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
79. Rnd2 ENSMUSG00000001313 102.01 1059.94 Rho family GTPase 2 [Source:MGI Symbol;Acc:MGI:1338755]
80. Marcksl1 ENSMUSG00000047945 100.65 1045.80 MARCKS-like 1 [Source:MGI Symbol;Acc:MGI:97143]
81. Srsf3 ENSMUSG00000071172 100.65 1045.80 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
82. Cd24a ENSMUSG00000047139 99.29 1031.67 CD24a antigen [Source:MGI Symbol;Acc:MGI:88323]
83. Hba-a2 ENSMUSG00000069917 99.29 1031.67 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
84. Trp53i11 ENSMUSG00000068735 99.29 1031.67 transformation related protein 53 inducible protein 11 [Source:MGI Symbol;Acc:MGI:2670995]
85. Gm17132 ENSMUSG00000061331 97.93 1017.54 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
86. Rps3a1 ENSMUSG00000028081 96.57 1003.41 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
87. Ssbp3 ENSMUSG00000061887 96.57 1003.41 single-stranded DNA binding protein 3 [Source:MGI Symbol;Acc:MGI:1919725]
88. Rps9 ENSMUSG00000006333 93.85 975.15 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
89. Sox2 ENSMUSG00000074637 93.85 975.15 SRY (sex determining region Y)-box 2 [Source:MGI Symbol;Acc:MGI:98364]
90. Tmpo ENSMUSG00000019961 93.85 975.15 thymopoietin [Source:MGI Symbol;Acc:MGI:106920]
91. Ndufa12 ENSMUSG00000020022 92.49 961.02 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
92. Pbx1 ENSMUSG00000052534 92.49 961.02 pre B cell leukemia homeobox 1 [Source:MGI Symbol;Acc:MGI:97495]
93. Ddx39b ENSMUSG00000019432 91.13 946.89 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
94. Hnrnpdl ENSMUSG00000029328 91.13 946.89 heterogeneous nuclear ribonucleoprotein D-like [Source:MGI Symbol;Acc:MGI:1355299]
95. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 91.13 946.89 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
96. Igf2 ENSMUSG00000048583 91.13 946.89 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
97. Rpl32 ENSMUSG00000057841 91.13 946.89 ribosomal protein L32 [Source:MGI Symbol;Acc:MGI:98038]
98. Cdk4 ENSMUSG00000006728 89.77 932.76 cyclin-dependent kinase 4 [Source:MGI Symbol;Acc:MGI:88357]
99. Hnrnpk ENSMUSG00000021546 88.41 918.63 heterogeneous nuclear ribonucleoprotein K [Source:MGI Symbol;Acc:MGI:99894]
100. Malat1 ENSMUSG00000092341 88.41 918.63 metastasis associated lung adenocarcinoma transcript 1 (non-coding RNA) [Source:MGI Symbol;Acc:MGI:1919539]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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