Multi-species Tomo-Seq Search Chicken Zebrafish Mouse Human Download

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Experiment Mouse_E11_5_slice_2, section s4.

Sample reads: 96,255. Showing entries 1-100.

No. Gene Name Gene ID Counts CPM Annotation
1. mt-Cytb ENSMUSG00000064370 3422.71 35558.87 mitochondrially encoded cytochrome b [Source:MGI Symbol;Acc:MGI:102501]
2. mt-Atp6 ENSMUSG00000064357 2669.80 27736.82 mitochondrially encoded ATP synthase 6 [Source:MGI Symbol;Acc:MGI:99927]
3. mt-Nd1 ENSMUSG00000064341 2184.81 22698.21 mitochondrially encoded NADH dehydrogenase 1 [Source:MGI Symbol;Acc:MGI:101787]
4. mt-Nd4 ENSMUSG00000064363 2027.76 21066.60 mitochondrially encoded NADH dehydrogenase 4 [Source:MGI Symbol;Acc:MGI:102498]
5. mt-Co2 ENSMUSG00000064354 1949.23 20250.74 mitochondrially encoded cytochrome c oxidase II [Source:MGI Symbol;Acc:MGI:102503]
6. Ptma ENSMUSG00000026238 1801.43 18715.23 prothymosin alpha [Source:MGI Symbol;Acc:MGI:97803]
7. mt-Co1 ENSMUSG00000064351 1455.00 15116.14 mitochondrially encoded cytochrome c oxidase I [Source:MGI Symbol;Acc:MGI:102504]
8. mt-Rnr2 ENSMUSG00000064339 1404.19 14588.27 mitochondrially encoded 16S rRNA [Source:MGI Symbol;Acc:MGI:102492]
9. Hbb-y ENSMUSG00000052187 1131.66 11756.93 hemoglobin Y, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96027]
10. mt-Nd3 ENSMUSG00000064360 905.33 9405.56 mitochondrially encoded NADH dehydrogenase 3 [Source:MGI Symbol;Acc:MGI:102499]
11. mt-Co3 ENSMUSG00000064358 803.71 8349.82 mitochondrially encoded cytochrome c oxidase III [Source:MGI Symbol;Acc:MGI:102502]
12. mt-Nd2 ENSMUSG00000064345 669.76 6958.20 mitochondrially encoded NADH dehydrogenase 2 [Source:MGI Symbol;Acc:MGI:102500]
13. Hba-x ENSMUSG00000055609 545.05 5662.58 hemoglobin X, alpha-like embryonic chain in Hba complex [Source:MGI Symbol;Acc:MGI:96019]
14. Hba-a1 ENSMUSG00000069919 521.95 5422.59 hemoglobin alpha, adult chain 1 [Source:MGI Symbol;Acc:MGI:96015]
15. Mdk ENSMUSG00000027239 489.62 5086.71 midkine [Source:MGI Symbol;Acc:MGI:96949]
16. Gm10800 ENSMUSG00000075014 485.00 5038.71 predicted gene 10800 [Source:MGI Symbol;Acc:MGI:3641657]
17. H19 ENSMUSG00000000031 466.52 4846.72 H19, imprinted maternally expressed transcript [Source:MGI Symbol;Acc:MGI:95891]
18. Actb ENSMUSG00000029580 448.05 4654.84 actin, beta [Source:MGI Symbol;Acc:MGI:87904]
19. Gm13340 ENSMUSG00000083563 448.05 4654.84 predicted gene 13340 [Source:MGI Symbol;Acc:MGI:3650227]
20. Eef1a1 ENSMUSG00000037742 429.57 4462.85 eukaryotic translation elongation factor 1 alpha 1 [Source:MGI Symbol;Acc:MGI:1096881]
21. Hbb-bh1 ENSMUSG00000052217 314.09 3263.11 hemoglobin Z, beta-like embryonic chain [Source:MGI Symbol;Acc:MGI:96024]
22. mt-Nd5 ENSMUSG00000064367 309.48 3215.22 mitochondrially encoded NADH dehydrogenase 5 [Source:MGI Symbol;Acc:MGI:102496]
23. Hba-a2 ENSMUSG00000069917 291.00 3023.23 hemoglobin alpha, adult chain 2 [Source:MGI Symbol;Acc:MGI:96016]
24. Igf2 ENSMUSG00000048583 244.81 2543.36 insulin-like growth factor 2 [Source:MGI Symbol;Acc:MGI:96434]
25. Tuba1b ENSMUSG00000023004 244.81 2543.36 tubulin, alpha 1B [Source:MGI Symbol;Acc:MGI:107804]
26. Cfl1 ENSMUSG00000056201 226.33 2351.36 cofilin 1, non-muscle [Source:MGI Symbol;Acc:MGI:101757]
27. Tpt1 ENSMUSG00000060126 207.86 2159.48 tumor protein, translationally-controlled 1 [Source:MGI Symbol;Acc:MGI:104890]
28. Tmsb4x ENSMUSG00000049775 203.24 2111.48 thymosin, beta 4, X chromosome [Source:MGI Symbol;Acc:MGI:99510]
29. Ubb ENSMUSG00000019505 203.24 2111.48 ubiquitin B [Source:MGI Symbol;Acc:MGI:98888]
30. Hsp90ab1 ENSMUSG00000023944 194.00 2015.49 heat shock protein 90 alpha (cytosolic), class B member 1 [Source:MGI Symbol;Acc:MGI:96247]
31. Eif4g2 ENSMUSG00000005610 189.38 1967.49 eukaryotic translation initiation factor 4, gamma 2 [Source:MGI Symbol;Acc:MGI:109207]
32. Hmga2 ENSMUSG00000056758 189.38 1967.49 high mobility group AT-hook 2 [Source:MGI Symbol;Acc:MGI:101761]
33. Npm1 ENSMUSG00000057113 189.38 1967.49 nucleophosmin 1 [Source:MGI Symbol;Acc:MGI:106184]
34. Rpl4 ENSMUSG00000032399 184.76 1919.49 ribosomal protein L4 [Source:MGI Symbol;Acc:MGI:1915141]
35. Set ENSMUSG00000054766 184.76 1919.49 SET nuclear oncogene [Source:MGI Symbol;Acc:MGI:1860267]
36. Rpl23 ENSMUSG00000071415 180.14 1871.49 ribosomal protein L23 [Source:MGI Symbol;Acc:MGI:1929455]
37. Rplp1 ENSMUSG00000007892 180.14 1871.49 ribosomal protein, large, P1 [Source:MGI Symbol;Acc:MGI:1927099]
38. Tubb5 ENSMUSG00000001525 180.14 1871.49 tubulin, beta 5 class I [Source:MGI Symbol;Acc:MGI:107812]
39. Pkm ENSMUSG00000032294 175.52 1823.49 pyruvate kinase, muscle [Source:MGI Symbol;Acc:MGI:97591]
40. Nedd4 ENSMUSG00000032216 166.29 1727.60 neural precursor cell expressed, developmentally down-regulated 4 [Source:MGI Symbol;Acc:MGI:97297]
41. Gm17132 ENSMUSG00000061331 152.43 1583.61 predicted gene 17132 [Source:MGI Symbol;Acc:MGI:4937959]
42. Rps4x ENSMUSG00000031320 152.43 1583.61 ribosomal protein S4, X-linked [Source:MGI Symbol;Acc:MGI:98158]
43. Rpsa ENSMUSG00000032518 147.81 1535.61 ribosomal protein SA [Source:MGI Symbol;Acc:MGI:105381]
44. Vim ENSMUSG00000026728 143.19 1487.62 vimentin [Source:MGI Symbol;Acc:MGI:98932]
45. Ybx1 ENSMUSG00000028639 143.19 1487.62 Y box protein 1 [Source:MGI Symbol;Acc:MGI:99146]
46. Chchd2 ENSMUSG00000070493 138.57 1439.62 coiled-coil-helix-coiled-coil-helix domain containing 2 [Source:MGI Symbol;Acc:MGI:1261428]
47. Grb10 ENSMUSG00000020176 138.57 1439.62 growth factor receptor bound protein 10 [Source:MGI Symbol;Acc:MGI:103232]
48. Ran ENSMUSG00000029430 138.57 1439.62 RAN, member RAS oncogene family [Source:MGI Symbol;Acc:MGI:1333112]
49. Rps20 ENSMUSG00000028234 138.57 1439.62 ribosomal protein S20 [Source:MGI Symbol;Acc:MGI:1914677]
50. Cdkn1c ENSMUSG00000037664 133.95 1391.62 cyclin-dependent kinase inhibitor 1C (P57) [Source:MGI Symbol;Acc:MGI:104564]
51. Tubb2b ENSMUSG00000045136 133.95 1391.62 tubulin, beta 2B class IIB [Source:MGI Symbol;Acc:MGI:1920960]
52. Gm14303 ENSMUSG00000081344 129.33 1343.62 predicted gene 14303 [Source:MGI Symbol;Acc:MGI:3651379]
53. Ldha ENSMUSG00000063229 120.10 1247.73 lactate dehydrogenase A [Source:MGI Symbol;Acc:MGI:96759]
54. Srsf3 ENSMUSG00000071172 120.10 1247.73 serine/arginine-rich splicing factor 3 [Source:MGI Symbol;Acc:MGI:98285]
55. Atp5g3 ENSMUSG00000018770 115.48 1199.73 ATP synthase, H+ transporting, mitochondrial F0 complex, subunit C3 (subunit 9) [Source:MGI Symbol;Acc:MGI:2442035]
56. Rps26 ENSMUSG00000025362 115.48 1199.73 ribosomal protein S26 [Source:MGI Symbol;Acc:MGI:1351628]
57. Rps5 ENSMUSG00000012848 115.48 1199.73 ribosomal protein S5 [Source:MGI Symbol;Acc:MGI:1097682]
58. Ywhab ENSMUSG00000018326 115.48 1199.73 tyrosine 3-monooxygenase/tryptophan 5-monooxygenase activation protein, beta polypeptide [Source:MGI Symbol;Acc:MGI:1891917]
59. Anp32b ENSMUSG00000028333 110.86 1151.74 acidic (leucine-rich) nuclear phosphoprotein 32 family, member B [Source:MGI Symbol;Acc:MGI:1914878]
60. Eef1b2 ENSMUSG00000025967 110.86 1151.74 eukaryotic translation elongation factor 1 beta 2 [Source:MGI Symbol;Acc:MGI:1929520]
61. Eif5a ENSMUSG00000078812 110.86 1151.74 eukaryotic translation initiation factor 5A [Source:MGI Symbol;Acc:MGI:106248]
62. Hnrnpc ENSMUSG00000060373 110.86 1151.74 heterogeneous nuclear ribonucleoprotein C [Source:MGI Symbol;Acc:MGI:107795]
63. Hsp90aa1 ENSMUSG00000021270 110.86 1151.74 heat shock protein 90, alpha (cytosolic), class A member 1 [Source:MGI Symbol;Acc:MGI:96250]
64. Rps9 ENSMUSG00000006333 110.86 1151.74 ribosomal protein S9 [Source:MGI Symbol;Acc:MGI:1924096]
65. U2af2 ENSMUSG00000030435 110.86 1151.74 U2 small nuclear ribonucleoprotein auxiliary factor (U2AF) 2 [Source:MGI Symbol;Acc:MGI:98886]
66. Fkbp1a ENSMUSG00000032966 106.24 1103.74 FK506 binding protein 1a [Source:MGI Symbol;Acc:MGI:95541]
67. Hnrnpu ENSMUSG00000039630, ENSMUSG00000111145 106.24 1103.74 heterogeneous nuclear ribonucleoprotein U [Source:MGI Symbol;Acc:MGI:1858195]
68. Gm21897 ENSMUSG00000094472 101.62 1055.74 predicted gene, 21897 [Source:MGI Symbol;Acc:MGI:5434061]
69. Hmgn1 ENSMUSG00000040681 101.62 1055.74 high mobility group nucleosomal binding domain 1 [Source:MGI Symbol;Acc:MGI:96120]
70. Pabpc1 ENSMUSG00000022283 101.62 1055.74 poly(A) binding protein, cytoplasmic 1 [Source:MGI Symbol;Acc:MGI:1349722]
71. Atp5a1 ENSMUSG00000025428, ENSMUSG00000116276 97.00 1007.74 ATP synthase, H+ transporting, mitochondrial F1 complex, alpha subunit 1 [Source:MGI Symbol;Acc:MGI:88115]
72. Eef2 ENSMUSG00000034994 97.00 1007.74 eukaryotic translation elongation factor 2 [Source:MGI Symbol;Acc:MGI:95288]
73. Fscn1 ENSMUSG00000029581 97.00 1007.74 fascin actin-bundling protein 1 [Source:MGI Symbol;Acc:MGI:1352745]
74. G3bp1 ENSMUSG00000018583 97.00 1007.74 GTPase activating protein (SH3 domain) binding protein 1 [Source:MGI Symbol;Acc:MGI:1351465]
75. Gm5805 ENSMUSG00000061848 97.00 1007.74 predicted gene 5805 [Source:MGI Symbol;Acc:MGI:3644633]
76. Igfbp4 ENSMUSG00000017493 97.00 1007.74 insulin-like growth factor binding protein 4 [Source:MGI Symbol;Acc:MGI:96439]
77. Ptms ENSMUSG00000030122 97.00 1007.74 parathymosin [Source:MGI Symbol;Acc:MGI:1916452]
78. Rpl26 ENSMUSG00000060938 97.00 1007.74 ribosomal protein L26 [Source:MGI Symbol;Acc:MGI:106022]
79. Rps3a1 ENSMUSG00000028081 97.00 1007.74 ribosomal protein S3A1 [Source:MGI Symbol;Acc:MGI:1202063]
80. Sparc ENSMUSG00000018593 97.00 1007.74 secreted acidic cysteine rich glycoprotein [Source:MGI Symbol;Acc:MGI:98373]
81. Calr ENSMUSG00000003814 92.38 959.74 calreticulin [Source:MGI Symbol;Acc:MGI:88252]
82. Pcbp1 ENSMUSG00000051695 92.38 959.74 poly(rC) binding protein 1 [Source:MGI Symbol;Acc:MGI:1345635]
83. Rpl18a ENSMUSG00000045128 92.38 959.74 ribosomal protein L18A [Source:MGI Symbol;Acc:MGI:1924058]
84. Trim28 ENSMUSG00000005566 92.38 959.74 tripartite motif-containing 28 [Source:MGI Symbol;Acc:MGI:109274]
85. Tuba1a ENSMUSG00000072235 92.38 959.74 tubulin, alpha 1A [Source:MGI Symbol;Acc:MGI:98869]
86. Akap12 ENSMUSG00000038587 87.76 911.75 A kinase (PRKA) anchor protein (gravin) 12 [Source:MGI Symbol;Acc:MGI:1932576]
87. Banf1 ENSMUSG00000024844 87.76 911.75 barrier to autointegration factor 1 [Source:MGI Symbol;Acc:MGI:1346330]
88. Cox8a ENSMUSG00000035885 87.76 911.75 cytochrome c oxidase subunit 8A [Source:MGI Symbol;Acc:MGI:105959]
89. Gm8292 ENSMUSG00000100215 87.76 911.75 predicted gene 8292 [Source:MGI Symbol;Acc:MGI:3648460]
90. H3f3b ENSMUSG00000016559 87.76 911.75 H3 histone, family 3B [Source:MGI Symbol;Acc:MGI:1101768]
91. Hnrnpa2b1 ENSMUSG00000004980 87.76 911.75 heterogeneous nuclear ribonucleoprotein A2/B1 [Source:MGI Symbol;Acc:MGI:104819]
92. Map1b ENSMUSG00000052727 87.76 911.75 microtubule-associated protein 1B [Source:MGI Symbol;Acc:MGI:1306778]
93. Myl6 ENSMUSG00000090841 87.76 911.75 myosin, light polypeptide 6, alkali, smooth muscle and non-muscle [Source:MGI Symbol;Acc:MGI:109318]
94. Ngfrap1 87.76 911.75 nerve growth factor receptor (TNFRSF16) associated protein 1, transcript variant 1
95. Ddx39b ENSMUSG00000019432 83.14 863.75 DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Source:MGI Symbol;Acc:MGI:99240]
96. Fkbp4 ENSMUSG00000030357 83.14 863.75 FK506 binding protein 4 [Source:MGI Symbol;Acc:MGI:95543]
97. Gnai2 ENSMUSG00000032562 83.14 863.75 guanine nucleotide binding protein (G protein), alpha inhibiting 2 [Source:MGI Symbol;Acc:MGI:95772]
98. Kpnb1 ENSMUSG00000001440 83.14 863.75 karyopherin (importin) beta 1 [Source:MGI Symbol;Acc:MGI:107532]
99. Lamp1 ENSMUSG00000031447 83.14 863.75 lysosomal-associated membrane protein 1 [Source:MGI Symbol;Acc:MGI:96745]
100. Ndufa12 ENSMUSG00000020022 83.14 863.75 NADH:ubiquinone oxidoreductase subunit A12 [Source:MGI Symbol;Acc:MGI:1913664]
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Yvernogeau L, Morin-Poulard I, Klaus A, Schulte-Merker S, Berezikov E, Junker JP, and Robin C. Multi-species tomo-sequencing identifies new major hematopoietic stem cell regulators in the microenvironment of the embryonic aorta. Submitted.
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